Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01390 atgaaaacttTCAAACTCaaccaccatcaccaccactTCTTCACCCTCCTTTTCTTACTCCTTCTACCCTTCCTTAAATCTCAAACTACAAGACAACAAAACAACACAGGCTACACttgcagcagcaacaacaacaataataacaaaaaccaaacaaaaatatatccaTGTCAAACCTATGCATACTACAGAGCAACACCACCAAATTACCTCGATTTAGCTACCATTTCAGACCTTTTTTCATTAAGTCGTTTAATGATCTCAAAACCAAGCAACATCTCTTCACCTTCATCTCCTTTAATCGCTAATCAACCCCTTTTAATCCCTTTAACTTGTTCTTGCAATTTCATCAACACCACTTTTGGTTCAATCTCTTACTCCAACATCACTTATAGTATAAAACCAAATGATACTTTTTTCCTTGTTTCAACTATAAACTATCAAAATCTCACTACTTATCCTTCTGTTGAAGTTGTTAATCCTAATCTTGTTGCTACTAATCTCTCTATTGGTGATAAtgttgtttttccaattttttgtaAGTGTCctgataaaacaaaaacaaattcaagTTTCATGATTTCTTATGTTGTTCAACCTTCTGATAATGTTTCATCAATTGCTTCAATGTTTGGAACAACTGAAAAATCCATAACTGATGTTAATGGtgaaaatttgtatatttatgatacaatttttgttCCTGTTAATAAATTACCTGTTTTGAAACAACCTAGTACTATTGCTCCTTCTCCTCCACCAAGTGGAAAttttgatgatggtggtgatgatgataAGAGTGGAACTGTTAGAGGGTTGGCTATTGGATTgggaattttagggtttttgttgattttgattttaggGATTTGGTTTTATAGAGAGGTTATGGTTAAGAAGGAAAAGAAAGGAAGAGATTTGTATTTGGGTGAGAAAGGGTATAAAgggaataataataatgataagaagaagaaacaaatggATGTGAATTTTATGGCTAATGTTTCTGATTGTTTGGATAAGTATAGAGTTTTTGGATTTGATGAATTAGTTGAAGCTACTAATGGGTTTGATGAAAGTTATTTGATTCAAGGAAGTGTTTATAAAGGTGAAATTGATGGACAAGTTTATGCAAttaagaagatgaagtggaatGCTTATGAGGAGCTCAAAATCTTGCAGAAGGTAAACCATGGGAATTTAGTGAAGTTGGAAGGATTTTGCATAGAACCAGAAGAATCAAATTGTTATCTAGTCTATGAATATGTTGAAAATGGATCTCTCTACTCATGGCTACATGAAGAGAAAAACCAAAAGTTGAATTGGATAACAAGGCTAAGAATAGCCATAGACATTGCCAATGGTTTATTATACATTCATGAACACACAAGACCAAAAGTTGTACACAAAGACATTAAAAGTAGCAACATTCTCTTGGACTCAAACAAGAGAGCTAAAATTGCGAATTTCGGTCTTGCAAAGAGCGGAATCAATGCAATTACAATGCACATTGTTGGAACACAAGGGTACATTTCACCCGAATATCTAGCCGATGGTATTGTGTCGACAAAGATGGATGTGTTTTCTTTTGGTGTTGTGTTGCTTGAGTTGATTTCGGGAAAGGAAGTTATTGATGATGAGGGAAATGTTTTGTGGGCTAATGCTATAAAAACATTTGAAGTGAAAAATGAACAAGAAAAGGCAAGGAGACTTAAGGAATGGTTGGATAAGGCTATTTTAAGGGAGACATGTTCAATGGAAAGTTTGATGGGTGTACTTAATGTTGCAATTGCTTGTTTGAATAGAGATCCATCAAAGAGGCCTAGCATTATAGATATTGTTTATTCACTTAGTAAATGTGAAGAGAGTGGATTTGAGCTCTCTGATGATGGGTTTAGTTCACAAAACTTGGTGGCTAGGTAA 1923 0.3006 MKTFKLNHHHHHFFTLLFLLLLPFLKSQTTRQQNNTGYTCSSNNNNNNKNQTKIYPCQTYAYYRATPPNYLDLATISDLFSLSRLMISKPSNISSPSSPLIANQPLLIPLTCSCNFINTTFGSISYSNITYSIKPNDTFFLVSTINYQNLTTYPSVEVVNPNLVATNLSIGDNVVFPIFCKCPDKTKTNSSFMISYVVQPSDNVSSIASMFGTTEKSITDVNGENLYIYDTIFVPVNKLPVLKQPSTIAPSPPPSGNFDDGGDDDKSGTVRGLAIGLGILGFLLILILGIWFYREVMVKKEKKGRDLYLGEKGYKGNNNNDKKKKQMDVNFMANVSDCLDKYRVFGFDELVEATNGFDESYLIQGSVYKGEIDGQVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEEKNQKLNWITRLRIAIDIANGLLYIHEHTRPKVVHKDIKSSNILLDSNKRAKIANFGLAKSGINAITMHIVGTQGYISPEYLADGIVSTKMDVFSFGVVLLELISGKEVIDDEGNVLWANAIKTFEVKNEQEKARRLKEWLDKAILRETCSMESLMGVLNVAIACLNRDPSKRPSIIDIVYSLSKCEESGFELSDDGFSSQNLVAR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01390 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Tsu01g01390 640 Gene3D LysM domain 180 241 IPR036779 -
Tsu01g01390 640 PANTHER - 14 636 - -
Tsu01g01390 640 Pfam Protein kinase domain 367 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01390 640 SMART serkin_6 361 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01390 640 Gene3D Transferase(Phosphotransferase) domain 1 423 631 - -
Tsu01g01390 640 SUPERFAMILY Protein kinase-like (PK-like) 342 617 IPR011009 -
Tsu01g01390 640 ProSiteProfiles LysM domain profile. 194 241 IPR018392 -
Tsu01g01390 640 SMART LysM_2 130 177 IPR018392 -
Tsu01g01390 640 SMART LysM_2 195 235 IPR018392 -
Tsu01g01390 640 Pfam LysM domain 196 234 IPR018392 -
Tsu01g01390 640 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 14 636 - -
Tsu01g01390 640 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01390 640 Gene3D Phosphorylase Kinase; domain 1 326 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01390 Tsu-Chr1 13237512 13241981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01390 13 619 Receptor kinase-like Gene Family AT2G23770 33.853 1.60e-85 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu01g01390 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01390 - - lang:109352405 860.907