Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01389 ATGGAATTCAAAGCAACTGAGCTTAGATTGGGATTACCAGGAACAGAGGAAAAGGAGAACAAAACAATGAATCTTAGTGTTAAGAATAACAAAAGACAATTACCTCAAACTTCTGAGGAATCTGTTTCAATTTCTAAGGTTTCAAACGATCAACAAGTTGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGCAAAGATAGTTGGGTGGCCACCAATTAGATCTTACAGGAAAAATAGCTTGCAAGAGGCTGAAGTTGGTGGGATCTTTGTGAAAGTTAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTAAGGATCTATGGAGGGTACCCTGAACTACTCAAAGCTCTAGAAACCATGTTCAAGTTAACCATAGgtGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGAGATGTTCCATGGAACATGTTTGTTACTTCTTGCAAAAGGCTAAGAATCATGAAAGGAGCAGAAGCTAGAGGTTTAGGTTGTGGTGtatga 555 0.3982 MEFKATELRLGLPGTEEKENKTMNLSVKNNKRQLPQTSEESVSISKVSNDQQVESSSAAPPAKAKIVGWPPIRSYRKNSLQEAEVGGIFVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWNMFVTSCKRLRIMKGAEARGLGCGV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01389 184 Gene3D - 81 184 - -
Tsu01g01389 184 MobiDBLite consensus disorder prediction 26 58 - -
Tsu01g01389 184 MobiDBLite consensus disorder prediction 1 25 - -
Tsu01g01389 184 SUPERFAMILY CAD & PB1 domains 78 173 - -
Tsu01g01389 184 PANTHER AUXIN-INDUCED PROTEIN 1 181 - -
Tsu01g01389 184 Pfam AUX/IAA family 6 181 IPR033389 -
Tsu01g01389 184 MobiDBLite consensus disorder prediction 1 60 - -
Tsu01g01389 184 ProSiteProfiles PB1 domain profile. 87 174 IPR000270 GO:0005515
Tsu01g01389 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 181 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01389 Tsu-Chr1 13231978 13234190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01389 90 180 B3 DNA Binding Superfamily AT2G46530 38.462 2.15e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Tsu01g01389 AUX_IAA 6.7e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01389 K14484 - gmx:100800212 298.901