Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01378 ATGGCCTCACTGTTATTCACAGTGCAGAGGCATGCTCCTGAGTTTGTAAAGCCATCAAAACCAACACCTCATGAAATAAAACTACTCTCAGACATTGATGACCAAGATGGATTACGTTTTCAAATTCCTGTCATAcaattttacaaatataatCCAAATATGGCAGGGAAAGACCCTGTTGATGTTATTAGAAAAGCACTTTCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGATTAAGGGAAGGTCCTGGTAGAAAACTTATGGTGGATTGTAATGATGaaggtgttttgtttattgAAGCTGATGCTGATGTTAGACTTGAAGAATTTGGTGATGCTCTTCAACCTCCATTTCCTTGTTTGAATGAACTTCTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAATACTCCATTGCTGCTTATTCAGGTAACACGTCTTAAGTGCGGTGGTTTTATTTTGGCCCTTCGTTTAAACCACACAATGAGTGATGCAGCAGGCTTCACACAATTCATGACTGCATTAGGCGAAATATCTTGTGGGATGAAAGAGCCTTCAATTGTACCAGTGTGGCATAGAGAGCTTCTAAATGCAAGGGATCCACCAAGAGTAACATGTACTCATCGCGAATACGAACAAGTACCCGACACCAAAGGAACCATTATTCCCTTAGACGACATGGCTCAACGCTCTTTCTTTTTTGGTCCCACTGAGTTAGCATCTATTCGCGCTCACCTTACAACTGATCAACAAAAGCAATCCAATTTTGAAATTCTCACGGCATGTCTCTGGCGTTGTCGTACAATAGCGTTACAACCAGACAATGACGAAGAAGTCCGCATAATTTGTCTCGTTAATGCACGTGGCAAGTTCAATCCTCCCCTACCAGTTGGTTACTATGGTAATACTTTTGCATTTCCTGTTGCTGTTACAACTGCAGGAAAACTAATTGAAAATCCGTTGGGATATGCATTGGAATTAGTTAAAAAAGCAAAAGCTGAAGTAACTCAAGAATATATGCATTCAGTTGCGGATCTAATGGTTATCAAGGATCGGCCTCATTTTACTGTGGTGAGATCATTTCTAGTGTCTGATATGACGCGTGCTAGGTTTGGAGAGGTTGAATTTGGTTGGGGGAAAGCTGTTTATGGAGGACCAGCTAAAGGAGGAGTTGGTGCTATTCCGGGTGTTGCTAGCTTTTATATACCATTTAAAAATGTTAAAGGGGAGGAAGGTTTGATTATACCGATTTGTTTACCAAATCAAGCCATGGAGAAGTTTATTAAAGAGTTAGATGGTGTACTtaagaacaacattaaccaaCATACTATGGTTGGTCCAAAATCTGGTTTCATTATTTCTTCGTtgtaa 1377 0.3856 MASLLFTVQRHAPEFVKPSKPTPHEIKLLSDIDDQDGLRFQIPVIQFYKYNPNMAGKDPVDVIRKALSKTLVFYYPFAGRLREGPGRKLMVDCNDEGVLFIEADADVRLEEFGDALQPPFPCLNELLFDVPGSSEVLNTPLLLIQVTRLKCGGFILALRLNHTMSDAAGFTQFMTALGEISCGMKEPSIVPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAQRSFFFGPTELASIRAHLTTDQQKQSNFEILTACLWRCRTIALQPDNDEEVRIICLVNARGKFNPPLPVGYYGNTFAFPVAVTTAGKLIENPLGYALELVKKAKAEVTQEYMHSVADLMVIKDRPHFTVVRSFLVSDMTRARFGEVEFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNVKGEEGLIIPICLPNQAMEKFIKELDGVLKNNINQHTMVGPKSGFIISSL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01378 458 Pfam Transferase family 11 432 - -
Tsu01g01378 458 Gene3D - 7 213 IPR023213 -
Tsu01g01378 458 Gene3D - 214 432 IPR023213 -
Tsu01g01378 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 442 - -
Tsu01g01378 458 PANTHER - 8 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01378 Tsu-Chr1 13068976 13096833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01378 39 433 Monolignol Biosynthesis Gene Families AT5G48930 30.120 2.11e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01378 K19861 - gmx:100797017 752.666