Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01375 ATGGAAGCAACATCAAGTTGCTTCTTCTGTGGTAGAATCCCATCAAAATCCAAGCttttatcatcatcttcatttgGGTCATTCTGTTTATTAACACGTAACAATGTTAATACAATCATGTGCAACAAAACATCATTAAAAACCCATAATCGTGTAGTAATTCAAAACGTCACAAACAGCAACGAAACAAAGGTTCCAAgcaacacaaaaagaagaagaaggagaagaaaaaatgGTGTAGCAACAGAagtacaacaacaacaaattcaaATAGCCTTTGAGAATCTGAACAAGAATGTTTATGTTCATGAGAATATTGGTGACCCAATTGGTTGGAAAGATGTTGGAAAAAGTGTGGTGAATTGGATTCGTGAGAGTATGAAAAATATGGCTTTTGATTTTGCTTCTGCTGAGTTACTTGAAGATTTGATTGAGTTTTCTGAGATGAAACAAAAAATGGGACCTGGTCTTACGTTTGTTATTCAAGCACAACCTTATTTGAATGCTGTTCCTATGCCTCTTGGTCTTGAAGTTATGTGTTTGAAAGCTTGTACTCATTATCCTACTCtttttgatcattttcaaaGAGAGTTACGTGACGTTCTTCAAGATATGCAGAGTAAAGGTTTGATTCAAGATTGGCGTGAAACTCAGTCTTGGAAATTGCTTAAGGAACTTGCCAATTCagCTCAGCATAGGGCAGTTGCAAGGAAAATAACACAGCCAAAGACTGTCCAAGGAGTTTTAGGAATGGACATAGAAAGAGTCAAAGTGATACAGAATAGAATCGATGAATTCACCAGCAACATGTCAGAACTTCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAAGAATTGGATGCGGTTCCTAGACCGGGTGATTCTTCTGATCCGTCGAAACCGATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGTAATTTAACTGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGATTGAAGGAAACCACCGATTGCCACCGACTACTCTTTCACCTGGAGAAATGGTTTGTGTGAGAACGTGTGATAGTAGGGGTGCAGTTAATACTTCTTGCATGCAAGGAGTTGTGGACAATCTCGGTGATGATGGTTATAGTATTACCGTTGCTTTAGAGTCACGCCATGGTGATCCTACTTTCTCTAAACTATTTGGGAAAAATGTGCGCATTGATCGTATTCAAGGACTGGCGGATACACTTACCTATGAGCGAAACTGTGAAGCACTAATGCTGCTTCAGAAGAACGGTTTACGAAAGAAAAATCCGGCTATTTCTGTTGTTGCAACTCTATTCGGAGAGGGAGAAGATGCTGCATGGCTTGAGAAGAATAGTTTGGTTGACtgggaagaagaaaaaatggatGGAACATTAGGAAGTGAATCCTTTGACAAATCTCAGCAGAGAGCAATTGCATTGGGTTTGAATAAGAAGAGGCCATTATTGGTCATCCAAGGGCCTCCCGGTACTGGCAAGACCGGTTTGCTCAAACAACTAATAGCATTTGCCGTTGAACAAGGTGAAAGGGTACTTGTTACAGCACCTACCAACGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGAATAAATATTGTTCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTATCATCAAAGTCTTTGGCAGAAATTGTAAATGCCAAGATGGCACCTTTTCGTGAAGAGTTTGAGAGGAAGAAGTCTGATCTAAGGAAAGATCTAAGGCTTTGTTTAAAGGATGATTCATTGGCTGCAGGCATACGCCAACTTCTAAAAAAACTAGCAAAGTCACTAAAGAAACAGGAAAAGCAGACCATAAATGAAGTTTTATCAAGTGCTCAGGTTGTGCTTGCCACCAATACAGGAGCAGCCGATCCTTTGATTCGACAGCTAGATGATTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCGTCTTGCTGGATTCCTATATTGCAGGCGAAACGCTGTATTCTTGCTGGTGATCAATGCCAATTAGCTCCTGTGATATTTTCGAGAAAGGCGTTAGAAGGTGGTTTGGGAATATCGCTATTGGAGAGAGCTGCAACTCTGCATGAAGGGATTCTCACCACAACTTTAACTACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCAAAGGAGATGTATGGAGGATTGCTGAAGTCCTCAAAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAGTGCCCTCTAGTATTGCTCGACACTCGAATGCCTTACGGAAGTCTATCACTTGGTTGCGAAGAGCATCTAGATCCAGCAGGAACTGGCTCGTTGTACAATGAAGGAGAAGCTGATATAGTTTTGCAGCAtgttttttcattaatttattcTGGTGTCAGCCCAAGTGCTATTGTAGTTCAGTCCCCTTATGTTGCTCAAGTTCAACTTTTGAGGGACATGCTTGATGGGGTTCCAGAAGCTGCTGGTACTGAAGTTTCCACAATCGATAGTTTTCAAGGTCGGGAAGCTGATGCTGTAATTTTATCAATGgtACGGTCGAACACATTGGGAGCTGTTGGATTCCTTGGTGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCTCGCAAACATTTAGCTGTAGTCTGTGACAGTTCAACTATATGCCATAATCCCTTCCTTGCAAGACTTATGCGCCATATTCGACACTTTGGTAGGGTGAAGCATGTAGAACCAGATAGTTTTGGAGGAGGATTTGGAATTGGGATGAATCCAATGTTACCTTCTATGGATTAG 2886 0.395 MEATSSCFFCGRIPSKSKLLSSSSFGSFCLLTRNNVNTIMCNKTSLKTHNRVVIQNVTNSNETKVPSNTKRRRRRRKNGVATEVQQQQIQIAFENLNKNVYVHENIGDPIGWKDVGKSVVNWIRESMKNMAFDFASAELLEDLIEFSEMKQKMGPGLTFVIQAQPYLNAVPMPLGLEVMCLKACTHYPTLFDHFQRELRDVLQDMQSKGLIQDWRETQSWKLLKELANSAQHRAVARKITQPKTVQGVLGMDIERVKVIQNRIDEFTSNMSELLNIERDVELEFTQEELDAVPRPGDSSDPSKPIEFLVSHSQPQQELCDTICNLTAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSRGAVNTSCMQGVVDNLGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPAISVVATLFGEGEDAAWLEKNSLVDWEEEKMDGTLGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQLIAFAVEQGERVLVTAPTNAAVDNMVEKLSNVGINIVRVGNPARISKTVSSKSLAEIVNAKMAPFREEFERKKSDLRKDLRLCLKDDSLAAGIRQLLKKLAKSLKKQEKQTINEVLSSAQVVLATNTGAADPLIRQLDDFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTTLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLVLLDTRMPYGSLSLGCEEHLDPAGTGSLYNEGEADIVLQHVFSLIYSGVSPSAIVVQSPYVAQVQLLRDMLDGVPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNPFLARLMRHIRHFGRVKHVEPDSFGGGFGIGMNPMLPSMD 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01375 961 Gene3D - 734 943 IPR027417 -
Tsu01g01375 961 CDD DEXXQc_SMUBP2 485 735 - -
Tsu01g01375 961 SMART AAA_5 501 716 IPR003593 -
Tsu01g01375 961 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 40 960 - -
Tsu01g01375 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 924 IPR027417 -
Tsu01g01375 961 Pfam AAA domain 712 915 IPR041679 -
Tsu01g01375 961 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 40 960 - -
Tsu01g01375 961 Gene3D - 314 420 - -
Tsu01g01375 961 Gene3D - 421 718 IPR027417 -
Tsu01g01375 961 Pfam AAA domain 486 703 IPR041677 GO:0004386
Tsu01g01375 961 Coils Coil 611 631 - -
Tsu01g01375 961 SMART ultradead3 482 734 IPR014001 -
Tsu01g01375 961 CDD SF1_C_Upf1 736 932 IPR041679 -
Tsu01g01375 961 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01375 Tsu-Chr1 13035159 13040823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01375 484 675 Core DNA Replication Machinery Family AT1G08840 25.000 4.14e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01375 - - aip:107625008 1481.08