Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01363 ATGGATTTGGACCAGTGGATCTCTAAGGTTAAAGATGGCCAACACCTTCTCGAAGACGAACTTCAACTTCTCTGCGAATACGTTAAAGAGATCCTAATTGAGGAGTCTAATGTGCAACCTGTTAATAGTCCAGTAACTGTTTGTGGTGACATTCATGGTCAGTTTCATGATCTAATGAAACTTTTTCAGACCGGTGGTCACGTGCCCGAGACTAATTACATTTTTatgGGTGATTTTGTTGATCGTGGTTATAATAGTCTTGAAGTATTCACCATCCTTTTGCTTCTAAAAGCTAGaTACCCAGCTAATATTACTCTTCTACGTGGAAACCATGAAAGTAGACAACTCACACAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATACTGTACCGATGTTTTCGACTATCTTACACTTTCTGCAATTATTGATGGAACTGTGCTTTGTGTTCACGGCGGCCTTTCTCCAGACATACGAACAATTGACCAGATAAGAGTCATTGAGCGGAACTGTGAAATTCCTCATGAGGGTCCATTTTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCACGTGGAGCAGGCTGGCTATTTGGATCCCGGGTTACATCTGAGTTCAATCACATAAACAACCTTGATCTTGTTTGTCGAGCACATCAACTTGTACAAGAAGGCCTTAAGTACATGTTCCAAGATAAAGGCCTTGTAACTgtATGGTCTGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGGTGAGTCACCCgacatcttttttattttga 858 0.3963 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMVSHPTSFLF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01363 285 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 276 - -
Tsu01g01363 285 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Tsu01g01363 285 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Tsu01g01363 285 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Tsu01g01363 285 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Tsu01g01363 285 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Tsu01g01363 285 PRINTS Serine/threonine phosphatase family signature 226 246 IPR006186 GO:0016787
Tsu01g01363 285 PRINTS Serine/threonine phosphatase family signature 249 265 IPR006186 GO:0016787
Tsu01g01363 285 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Tsu01g01363 285 SUPERFAMILY Metallo-dependent phosphatases 2 278 IPR029052 -
Tsu01g01363 285 Gene3D - 1 284 IPR029052 -
Tsu01g01363 285 CDD MPP_PP2A_PP4_PP6 2 276 - -
Tsu01g01363 285 Pfam Calcineurin-like phosphoesterase 44 235 IPR004843 GO:0016787
Tsu01g01363 285 SMART pp2a_7 16 282 IPR006186 GO:0016787
Tsu01g01363 285 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01363 Tsu-Chr1 12935678 12940700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01363 43 221 Calmodulin-binding Proteins AT5G63870 37.500 1.52e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01363 K15498 - qlo:115967759 582.408