Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01360 ATGCTTCAGAAGATGAAGCTTTTAAAAATGTCGTGTCTTCTCttgttcttttgtttgtttgtaatgGCCACATCACTTCATGCTGCAACAGAAAACCAAGGGAGCGAGGCAGATGTTCTGTTGAAGTGGAAAGCAAGCCTCGACAACGAAAGCAAGCCGTTGCTCTCTTCGTGGATTCGTAATAATCCTTGTGGTGGTTGGAAAGGAATCACATGTGATGAGTCAAAATCCGTATACAAGGTAAATCTCACCAATATTGGATTAAGAGGTACGCTTCAAAGTCTCAACTTCTCATCACTTCCAAAATTTCGCAGTTTAGTTTTAAGAAACAACTCCTTTTACGGAGTTGTTCCACACCATATCGGGGTGATGTCCAATCTAGAAACTCTTGATTTGTCACTAAATAAACTCTCTGGTAGCATTCCATATAGCATTGGCAATTTGTCCAAACTATCCTATCTTGATCTCAGTTTCAATTATCTGACTGGTATTATTCCATATCAGATAACCCAATTGGTTGGTCTTTATGTATTGTCTATGAGTGCTAACAAAGATTTAAGTGGCTCACTTCCTCAAGATATTGGTAGATTGAAGAATTTGACATTGCTTGATATTTTTTCGTGCAATTTCACAGGGACTATACCAATATCGATAGGACAGATAACCAACATGTCACATCTTGATGTTGCACAAAACAACCTTGATGGATACATTCCTCAAGGAATTTGGCATATGGACTTTAAGCATTTGTCACTTGCAAATAATAACTTTAATGGTTCCATCCCACAAAGTATTTTCAACTCACAAAACCTAGAGTTTCTACATCTTCAAGAAAGTGGCCTTTCTGGTTTCATGCCTAAGGAGTTTGGGATGTTGGGTAAGTTAATAGATCTTGATATTAGTCACTGCAATCTTATTGGGTCTATATCTACTTCTATAGGAAACTTGGCCAATATATCAAATCTCCAGCTACATGACAATCAACTTTTTGGCCACATCCCTCGTGAAATTGGGAATTTGGTTAACCTCGAGCGTTTATATCTTGGAAATAATAGTCTTTCTGGCTCCTTTCCTCGAGAAATTGTATTTCTAAAACAACTCGGTGAACTTGATTTGTCTAATAACAATATCTTTGGCACAATCCCTTCTACAATTGGAAACTTGAGCAATTTACAATTACTTTACCTTTATAGAAATAGTCTTAGTGGTAGCATTCCCAATGAAGTTGTACAACTTCATTCTCTTAAAACAATTCAATTGTCATTTAACTACCTCTCTGGGCCAATCCCATCATCCATAGGTAACTTGGTAAATTTGGGTTCTAttttccttgatcaaaataAACTCTCAGGATTTATTCCACCTTCCATATGTTACTTGATTAATTTGGATCAAATTGACCTTTCACTAAACCAACTCTCTGGACAAATTCCTTCCACTATTGGAAATTTAACGAAACTAAGTGAATTAGATCTCGGCTCAAATGCTTTGACTGGACAAATTCCGTCTTCCATAGGTAACTTGGTGAATTTGGATACTATTTCCCTTTATGATAATAAACTCTCTGGCCCAATCCCGTCCACTATCGGAAATTTGACAAACCTCAgtgaattaattcttttatcaAATGATCTCACTGGAAATATTCCGACAGAAATGAATAAGCTTACCAATTTGGAAAATGTCCAGTTAAGTACTAATAATTTCACAGGTCATTTACCTCACAATATTTGTGTTGGTGGAAAGTTAACTTTTTTCTCTGCTAGTATTAACCAATTTACAGGTCCAGTTCCAGAGAGTTTAAAGAATTGTTCGAGCCTTGAGAGAGTGAGACTTGAACAAAATCAATTGAGTGGAAATATAACAGATAGTTTTGGTGTGTATCCAAATTTGAACTACATGGAATTGagtgataataatttttatggcCATCTTTCTCCAAATTGGGGAGAGTGCAAGAATCTCACAAGCCTTAGAATCtccaataataatttaacaggAAGCATACCACCAGAACTAGGCAAGGCAACAAATTTACATGAACTTAACTTGTCTTCAAACCATCTTACGGGAAAAATTCCAAAGGAGCTTGGAAACTTATCTCTGTTGCTCAAACTCTCGATAAGTAACAATCATCTTTCGGGAGAAGTACCTGTACAAATTGCATCATTGCATGAATTAATTGCCTTAGAGCTAGCAACAAATAATTTAAGTGGCTTTATCCCTGAAAAACTTGGAAGCTTGTCTAGGTTATTGCAGTTGAATTTGAGCCAAAATAAGTTTGATGGAAACATTCCTTTTGAGTTTAGCCAATTGAAAGTTATTGAAAATCTTGATCTTGGTGGAAATTTCTTGAATGGAACCATACCATCAATACTTGGACAGTTAAATTCCTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTACCATTCCCTTGACCTATGGTGAGATGTTAGGCTTGACAACTGTTGATATATCATACAACCAATTGGAGGGTCCGATTCCAAGCATTCCAGCTTTCCAAAAAGCTCCAATTGAAGCACTAAGAAATAACAAAGGGTTGTGTGGTAATGTCTCTGGTCTAGAGCATTGCTCAACATCAGGAGGCAACTTTCGTAGTCATAAGACAAATACAATTTTGGTCCTAGTTTTACCCCTCACTCTAGGCACTCTGTTGTTAGTATTATTTGTTTATGGCCTCTCATATATTTTCTACCAAACTTCaatcacaaaagaaaacaaGCCTGCAGAAGAAATTCGAACTGAAAATCTATTTGCAATATGGAGTTTTGATGGCAAAATGGTATATGAGAACATTATCGAAGCCACAGAAGATTTTGACAACAAGCATCTTGTTGGAGTTGGAGGGCATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTGGTAGCTGTGAAGAAACTTCATTCATTACCAAATGGAGAGGTGTCTAATTTTAAAGCTTTTGCAAGTGAGATTCGTGCATTGACAGAAATTCGACATCGCAACATTGTGAAGTTATATGGGTTTTGTTCACACTCACGACACTCATTTTTGGTTTATGAGTTCTTGGAGAAGGGTAGTGTGGACAACATTTTGAAATATGATGAACGAGCAACCGCATTTGATTGGAATATGAGAGTGAATGGAATTAAAGATATAGCAAACGCTTTATGCTATATGCATCATGATTGTTCGCCAGCAATTGTTCATCGTGATATATCCAGCAAGAAtgttgttttggatttggaATATGTAGCTCATGTTTCAGACTTCGGAACAGCCAAATTTCTTAATCCTGATTCTTCCAACTGGACCTCTTTTGTAGGAACATTGGGATATTCAGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGGGTATTATCCTTGGAAATACTTCATGGAAAGCACCCAAGAGATATTATTTCTTTGTTGCAATCATCTTCATTAAATGTTGAGGGACAGAGACTTGATACTATGCAATTGATAGATAAGTTGGACCAACGTCTTCCTCATCCTACAAATGCTATTGTTAAGGAGGTGGTATCAATGATAAGAGTAGCCATTTCTTGTTTAACTGAAAGTCCACGTTTTCGCCCTACCATGGAGCAGGTTTGCAAGGAGCTTGTAGTATCAAAGTCATATTGA 3687 0.3577 MLQKMKLLKMSCLLLFFCLFVMATSLHAATENQGSEADVLLKWKASLDNESKPLLSSWIRNNPCGGWKGITCDESKSVYKVNLTNIGLRGTLQSLNFSSLPKFRSLVLRNNSFYGVVPHHIGVMSNLETLDLSLNKLSGSIPYSIGNLSKLSYLDLSFNYLTGIIPYQITQLVGLYVLSMSANKDLSGSLPQDIGRLKNLTLLDIFSCNFTGTIPISIGQITNMSHLDVAQNNLDGYIPQGIWHMDFKHLSLANNNFNGSIPQSIFNSQNLEFLHLQESGLSGFMPKEFGMLGKLIDLDISHCNLIGSISTSIGNLANISNLQLHDNQLFGHIPREIGNLVNLERLYLGNNSLSGSFPREIVFLKQLGELDLSNNNIFGTIPSTIGNLSNLQLLYLYRNSLSGSIPNEVVQLHSLKTIQLSFNYLSGPIPSSIGNLVNLGSIFLDQNKLSGFIPPSICYLINLDQIDLSLNQLSGQIPSTIGNLTKLSELDLGSNALTGQIPSSIGNLVNLDTISLYDNKLSGPIPSTIGNLTNLSELILLSNDLTGNIPTEMNKLTNLENVQLSTNNFTGHLPHNICVGGKLTFFSASINQFTGPVPESLKNCSSLERVRLEQNQLSGNITDSFGVYPNLNYMELSDNNFYGHLSPNWGECKNLTSLRISNNNLTGSIPPELGKATNLHELNLSSNHLTGKIPKELGNLSLLLKLSISNNHLSGEVPVQIASLHELIALELATNNLSGFIPEKLGSLSRLLQLNLSQNKFDGNIPFEFSQLKVIENLDLGGNFLNGTIPSILGQLNSLETLNLSHNNLSGTIPLTYGEMLGLTTVDISYNQLEGPIPSIPAFQKAPIEALRNNKGLCGNVSGLEHCSTSGGNFRSHKTNTILVLVLPLTLGTLLLVLFVYGLSYIFYQTSITKENKPAEEIRTENLFAIWSFDGKMVYENIIEATEDFDNKHLVGVGGHGSVYKAELPTGQVVAVKKLHSLPNGEVSNFKAFASEIRALTEIRHRNIVKLYGFCSHSRHSFLVYEFLEKGSVDNILKYDERATAFDWNMRVNGIKDIANALCYMHHDCSPAIVHRDISSKNVVLDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTLGYSAPELAYTMEVNEKCDVYSFGVLSLEILHGKHPRDIISLLQSSSLNVEGQRLDTMQLIDKLDQRLPHPTNAIVKEVVSMIRVAISCLTESPRFRPTMEQVCKELVVSKSY 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01360 1228 Pfam Protein kinase domain 950 1221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01360 1228 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1073 1085 IPR008266 GO:0004672|GO:0006468
Tsu01g01360 1228 PRINTS Leucine-rich repeat signature 796 809 - -
Tsu01g01360 1228 PRINTS Leucine-rich repeat signature 151 164 - -
Tsu01g01360 1228 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Tsu01g01360 1228 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515
Tsu01g01360 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 12 176 - -
Tsu01g01360 1228 Gene3D Phosphorylase Kinase; domain 1 909 1027 - -
Tsu01g01360 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 276 423 - -
Tsu01g01360 1228 Pfam Leucine Rich repeats (2 copies) 653 693 IPR025875 -
Tsu01g01360 1228 SUPERFAMILY L domain-like 247 574 - -
Tsu01g01360 1228 ProSitePatterns Protein kinases ATP-binding region signature. 955 978 IPR017441 GO:0005524
Tsu01g01360 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 152 309 - -
Tsu01g01360 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 416 1227 - -
Tsu01g01360 1228 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Tsu01g01360 1228 ProSiteProfiles Leucine-rich repeat profile. 678 701 IPR001611 GO:0005515
Tsu01g01360 1228 SMART LRR_typ_2 148 171 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 388 412 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 436 460 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 556 580 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 796 820 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 652 676 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 364 387 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 677 700 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 316 340 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 124 147 IPR003591 -
Tsu01g01360 1228 SMART LRR_typ_2 484 508 IPR003591 -
Tsu01g01360 1228 ProSiteProfiles Protein kinase domain profile. 949 1224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01360 1228 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 176 - -
Tsu01g01360 1228 SMART LRR_sd22_2 340 355 - -
Tsu01g01360 1228 SMART LRR_sd22_2 508 534 - -
Tsu01g01360 1228 SMART LRR_sd22_2 364 390 - -
Tsu01g01360 1228 SMART LRR_sd22_2 748 780 - -
Tsu01g01360 1228 SMART LRR_sd22_2 484 507 - -
Tsu01g01360 1228 SMART LRR_sd22_2 436 462 - -
Tsu01g01360 1228 SMART LRR_sd22_2 124 150 - -
Tsu01g01360 1228 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 416 1227 - -
Tsu01g01360 1228 Gene3D Transferase(Phosphotransferase) domain 1 1028 1227 - -
Tsu01g01360 1228 Gene3D Ribonuclease Inhibitor 411 533 IPR032675 -
Tsu01g01360 1228 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 152 309 - -
Tsu01g01360 1228 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 276 423 - -
Tsu01g01360 1228 SUPERFAMILY RNI-like 525 835 - -
Tsu01g01360 1228 Gene3D Ribonuclease Inhibitor 540 870 IPR032675 -
Tsu01g01360 1228 Gene3D Ribonuclease Inhibitor 247 410 IPR032675 -
Tsu01g01360 1228 Gene3D Ribonuclease Inhibitor 33 181 IPR032675 -
Tsu01g01360 1228 SUPERFAMILY L domain-like 35 329 - -
Tsu01g01360 1228 ProSiteProfiles Leucine-rich repeat profile. 798 819 IPR001611 GO:0005515
Tsu01g01360 1228 Gene3D Ribonuclease Inhibitor 182 246 IPR032675 -
Tsu01g01360 1228 SUPERFAMILY Protein kinase-like (PK-like) 932 1222 IPR011009 -
Tsu01g01360 1228 Pfam Leucine Rich Repeat 342 363 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01360 Tsu-Chr1 12917291 12921282 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01360 1 670 Receptor kinase-like Gene Family AT4G08850 34.370 1.55e-100 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu01g01360 Pkinase 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01360 - - mtr:MTR_1g040615 1477.23