Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01356 atgGTCACATCACCTCATGCATCAACAAGAATCCAAGGAGTTGAAGTTGATACTCTGTTGAAATGGAAAGCAAGCTTTGACAACAATAGCAAAACTTTACTTTCTTCATGGAATATTGGTAATAATCCTTGTACTTGGGAAGGAATAACATGTGATGATGAGTCAAAATCTATCTCTAAGATAAATCTCACCAATATTGGACTAAAAGGTATgcttcaaaatctcaatttctcATCACTTTCAAAAATTCACACCTTAGTtttaagaaacaacttattCTATGGAGTTGTTCCACAAAATATTGGGGTGATGTTCAATCTAAACACTCTTGATTTATCTACTAATGAACTCTCTGGGCCAATTCCTACTACTATTGGAAATTTGACAAAACTTAAGACATTATCTCTTTTCTCAAATGATCTCACTGGAAATATTCCAACAGAAATGAACAAGCTTACCAATTTGGAAACTCTACAGTTGGCTTATAATAATTTCATAGGTCCCTTACCTCACAACATATGTTCTGGTGGAAAGTTAATTAAGTTATCGGCTAGCAATAACCAATTCACCGGTCCAATTCCGGGGAGTTTGAAGAACTGCTCTAGCCTTGTAAGAGTTAGGCTTCAACAAAACAATTTAACCGACAATTTAGCGGATAGTTTTGGCGTGTATCCAAATTTGGACTACATGGAATTGagtgataataatttttatggtCATCTTTCTCCAAACTGGGGAAAATGCAAGAATCTTACAAGCCTTAAAATCTCTAACAATAATTTAACAGGAAGTATACCTCCAGAATTGGCTGAGGCAACTAAATTACATATACTTGACTTGTCTTCGAACCAAATTACAGGAAAAATTCCAATGGAGCTAGGCAACTTATCTTCATTGATCCAACTATCAATAAGTGGTAATAGTCTTTCAGGAGAAGTTCCTGTACAAATTTCATCATTGCAAGAACTAATTACTTTGGAGCTTTCAACAAATAATTTAAGTGGTTCCATCCCAAAACAACTTGGAAGGTTGCCAATGTTATTGGACTTGAATTTGAGCCAAAATAAGTTTGAAGGGAGCATTCCTAATGAGATTGGCCAATTAAATGTTATTCAAAATCTTGATCTTAGTATGAATTTTTTAGATGGAACCATACCAACAATGCTTGAACAGTTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTGTCATTCCCTTTAGCTATGGTGAGATGTTAAGTTTGACAGTTGTTGATATATCATACAACCAGTTGGAGGGTACAATTCCAAGCATTCCGGCCTTCGAAAAAGCTCCAATTGAAGCACTAAGCAACAACAAAGGCTTGTGTGGTAATGCCTCTGGTATTGAGCTTTGTTCAACATCTAATGAAAACTCTCATAAGACTAACAAAAATTTGGTGGTAATTTTACCGGTCATTCTAGGCACTgtattgttaatattatttgtttatggGCTTTCATATGTCCTATGTCGAACAAAAGAGTACAAGGCTGAAGAAGACACACAAATTGAAAATCTATTTACAATATGGAGTTTTGACGGAAGAATGGTATATGAGAACATCATTGATGCCACAGAAGAGTTTGACAACAAGCATCTGATTGGGGTCGGAGGACATGGAAGTGTTTACAAAGCAGTGTTGTCTACAGGACAAGTTATAGCTGTGAAGAAACTCCATTCATTACAAAATGAAGAAATGTCGAATCTGAAAGCTTTTGCAAGTGAGATCCAAACTTTAACAGAAATTAGACATCGAAACATTGTGAAGTTATATGGGTATTGTTCACATAGATTGCACTCACTTCTGGTTTATGAGTTCTTGGAGAAGGGTAGTGTGGACAACATTTTGAAAGACGATGAAAAAGCAACCATGTTTGATTGGAATAAGAGGGTGAATGTCATTAAAGATGTAGCTAATGCTTTATGCTATATGCATCATGATTGCTCACCTTCAATTGTTCATCGCGATTTATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTGGCTCATGTCTCAGATTTCGGTACAGCTATGTTTCTTAATCCTGATTCATCCAACTGGACCTCTTTTGTGGGCACATATGGATATGCTGCACCAGAACTTGCATATACAATGAAAGTAAATGAGAAGTGTGATGTGTATAGTTTTGGAGTATTAACTTTGGAAATACTTTTTGGAAAGCATCCCGGAGATATTGTATCTACTTTGTTGCAATCGAGTGGCATATACCAAACAATTGAAGCTATGTCATTGAATGATAAGTTGGATCAACGCCTTCCTCGTCCTAGGAATGCTATCGGGAAAGAAGTTGAATCAATTATCAGAATTGCATGTCATTGCTTAATTGAAAGCCCACATAGTCGCCCATCAATGGAGCAAGTTTGCAAGGAGATTGTAATGTCAAAGTCAtcttcaaatatatga 2463 0.3475 MVTSPHASTRIQGVEVDTLLKWKASFDNNSKTLLSSWNIGNNPCTWEGITCDDESKSISKINLTNIGLKGMLQNLNFSSLSKIHTLVLRNNLFYGVVPQNIGVMFNLNTLDLSTNELSGPIPTTIGNLTKLKTLSLFSNDLTGNIPTEMNKLTNLETLQLAYNNFIGPLPHNICSGGKLIKLSASNNQFTGPIPGSLKNCSSLVRVRLQQNNLTDNLADSFGVYPNLDYMELSDNNFYGHLSPNWGKCKNLTSLKISNNNLTGSIPPELAEATKLHILDLSSNQITGKIPMELGNLSSLIQLSISGNSLSGEVPVQISSLQELITLELSTNNLSGSIPKQLGRLPMLLDLNLSQNKFEGSIPNEIGQLNVIQNLDLSMNFLDGTIPTMLEQLKYLETLNLSHNNLSGVIPFSYGEMLSLTVVDISYNQLEGTIPSIPAFEKAPIEALSNNKGLCGNASGIELCSTSNENSHKTNKNLVVILPVILGTVLLILFVYGLSYVLCRTKEYKAEEDTQIENLFTIWSFDGRMVYENIIDATEEFDNKHLIGVGGHGSVYKAVLSTGQVIAVKKLHSLQNEEMSNLKAFASEIQTLTEIRHRNIVKLYGYCSHRLHSLLVYEFLEKGSVDNILKDDEKATMFDWNKRVNVIKDVANALCYMHHDCSPSIVHRDLSSKNVILDLEYVAHVSDFGTAMFLNPDSSNWTSFVGTYGYAAPELAYTMKVNEKCDVYSFGVLTLEILFGKHPGDIVSTLLQSSGIYQTIEAMSLNDKLDQRLPRPRNAIGKEVESIIRIACHCLIESPHSRPSMEQVCKEIVMSKSSSNI 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01356 820 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524
Tsu01g01356 820 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 83 817 - -
Tsu01g01356 820 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 115 - -
Tsu01g01356 820 ProSiteProfiles Protein kinase domain profile. 540 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01356 820 Gene3D Phosphorylase Kinase; domain 1 502 618 - -
Tsu01g01356 820 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 83 817 - -
Tsu01g01356 820 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 12 115 - -
Tsu01g01356 820 PRINTS Leucine-rich repeat signature 107 120 - -
Tsu01g01356 820 PRINTS Leucine-rich repeat signature 392 405 - -
Tsu01g01356 820 Pfam Protein kinase domain 541 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01356 820 SUPERFAMILY Protein kinase-like (PK-like) 520 810 IPR011009 -
Tsu01g01356 820 ProSiteProfiles Leucine-rich repeat profile. 274 297 IPR001611 GO:0005515
Tsu01g01356 820 ProSitePatterns Tyrosine protein kinases specific active-site signature. 664 676 IPR008266 GO:0004672|GO:0006468
Tsu01g01356 820 SUPERFAMILY L domain-like 55 146 - -
Tsu01g01356 820 Pfam Leucine rich repeat N-terminal domain 15 52 IPR013210 -
Tsu01g01356 820 Gene3D Ribonuclease Inhibitor 13 173 IPR032675 -
Tsu01g01356 820 SUPERFAMILY RNI-like 119 435 - -
Tsu01g01356 820 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Tsu01g01356 820 Pfam Leucine rich repeat 372 429 IPR001611 GO:0005515
Tsu01g01356 820 SMART LRR_typ_2 392 415 IPR003591 -
Tsu01g01356 820 SMART LRR_typ_2 296 320 IPR003591 -
Tsu01g01356 820 SMART LRR_typ_2 344 368 IPR003591 -
Tsu01g01356 820 SMART LRR_typ_2 104 128 IPR003591 -
Tsu01g01356 820 SMART LRR_typ_2 152 176 IPR003591 -
Tsu01g01356 820 Gene3D Transferase(Phosphotransferase) domain 1 619 819 - -
Tsu01g01356 820 Gene3D Ribonuclease Inhibitor 174 472 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01356 Tsu-Chr1 12860503 12863133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01356 78 712 Receptor kinase-like Gene Family AT4G08850 46.759 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu01g01356 Pkinase 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01356 - - mtr:MTR_0365s0020 1190.25