Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01351 ATGGCTGGAGTAAGAGAACAAGACCAATACATGCCAATAGCAAATGTGATTCGAATAATGCGAAGAATCCTTCCGTCACACGCAAAAATCTCCGATGATGCAAAAGAAACGATTCAAGAATGTGTTTCGGAGTACATAAGCTTCATAACTTCCGAAGCAAACGAGCGTTGCCAAAAAGAACAAAGGAAAACAGTTACAGCTGAGGATTTACTTTGGGCTATGGGGAAACTTGGTTTTGATGATTATGTTAATCCTTTAGCATTTTACCTTCAACGTTACCGCGAAAGTGAAGGCGAACCTGCTTCTGTTCGACGCACTTCTTCTCGGGCTTTGCCTCATGCTCTTCCTCTTTCAATgctgcagcagcagcagcatcCATTTTCATCGGCTATGCCGGCTTccaataatgataataatttttatggtGTTGGttatggttttgattttgatcaagGGTTTTATAGAGATGGTGTTGGTGATGGTGGTGATGCTTCTTCTTCTGCTGCTTTTGTACCGAGTTTTGATCATTTTCCTCATCTCAAACGTGATAATAATAACATGTGA 564 0.3652 MAGVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANERCQKEQRKTVTAEDLLWAMGKLGFDDYVNPLAFYLQRYRESEGEPASVRRTSSRALPHALPLSMLQQQQHPFSSAMPASNNDNNFYGVGYGFDFDQGFYRDGVGDGGDASSSAAFVPSFDHFPHLKRDNNNM 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01351 187 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Tsu01g01351 187 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Tsu01g01351 187 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Tsu01g01351 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Tsu01g01351 187 SUPERFAMILY Histone-fold 7 107 IPR009072 GO:0046982
Tsu01g01351 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 127 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu01g01351 187 Gene3D Histone, subunit A 2 139 IPR009072 GO:0046982
Tsu01g01351 187 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu01g01351 187 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01351 Tsu-Chr1 12823825 12824388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01351 4 99 CCAAT-HAP3 Transcription Factor Family AT5G47670 84.375 4.03e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu01g01351 CBFD_NFYB_HMF 4.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01351 K08065 - gmx:100811633 219.164