Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01338 ATGTCTTTGGCATCCAAGGCTCTTCCTGCTCTTCATCCTATCAAATCTTTGCCTCCTGGTTTCAAGGTTAATGGTAATCTTACCCGTGATTTAATGGAAAGCCGGGGAGATGCTAAATTGAGAAGCAGTTGTTTGGTTGGATCAACTAGTCCTGAAAATGTTGCTGATGTTTCTGAAGAATCTCAAGACGATGCAGGTGGCACGAGTCTTTTCAATGAAGATATAGCGTATAGTGGAAAGGCTGTATTATTTGAAGACAGGACATCTATTGCTGATGAAGATTTGGAATCTGTTCCTCTTCCCTTCCAAACAATTTCAGTGTCTTCTAGGGAATCAAGGTGGAGTGATACAACGCCTAGTGTTTCAAAGAAGAAACTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGCAAAATTAATAGCAACTTCTGGAACAGAATCAGTTATTTCATTGCCTGATGGGAAGGTTTTAAAAGTGAAACAAGACAGTTTGGTATCAGCAAATCCTGATATTCTTGACGGAGTGGATGACCTCATGCAACTTAGTTATTTGAACGAACCGTCAGTTTTATACGATCTACAATATAGATACAATCAAAATATGATTTATACAAAAGCGGGGCCCGTTTTGGTTGCTATAAATCCTTTCAAGAAAGTTCCTCTGTATGGTAACAATTATATTGAAGCCTACAAGCGTAAAGCAACTGAAAGCCCTCATGTATATGCAATTACAGACAGAGCCATCCGAGAAATGATACGAGttatcaTCTACATATTCAGTGGTGAGAGTGGAGCTGGGAAGACTGAGACAGCAAAGATAGCAATGCAGTACTTGACTGCTCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTGAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACTTTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATTTCTGGTGCTAATATTCAAACATGTAGGTTTTCTTCTTCTAGAGTAGTTCAATGCAATGAAGGGGAAAGGtcatatcatatattttatcaGCTATGTGCTGGTGCACCACCATCTCTTCGGGAGAAGCTCAACCTGCAAAATGCAGAAgattataaatatttgaagcagaGCAATTGTTATTCAATTAATGGTGTTAATGATGCAGAAGAATTTCGCATAGTCATGGAAGCTCTTGATGTTGTCCACATTAGTAAAGAAGACCAAGAGACTGTATTTTCTATGCTTGCTGCCGTATTATGGTTAGGGAACATATCATTTACTGTCATTGATAATGAAAACCATGTTCAAGCTGTTGAAAATGAGGGTTTGTTACACGTCGCCGAATTGATTGGCTGTGACATTGAAGATCTCAAGTTGACTCTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATCATCCAAAAGTTGACACAATCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAATCTATATATGCATGCCTGTTTGATTGGTTGgttgaacaaataaataaatcactTGCTGTTGGCAAAAGACGTACCGGAAGATCAATCAGTATTCTAGATATATATGGCTTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTGCAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAATCAAGACTGCCTTAATCTTTTTGAGAAGAGACCACTGGGGTTATTATCCCTTCTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATTTGACATTTGCCAACAAACTTAAACAACATTTAAATTCTAAGTCATGTTTCAAAGGAGAACGAGACCAAGCCTTTACTGTGTGTCATTATGCTGGAGAGGTGACTTATGATACAACTGGGTTTCTGGAGAAGAATAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCGTGCACATGTCATCTTCCTCAAATATTTGCATCTCATATGCTTACACAGTCTGAAAAGCCAGTAGTTGGTCCTTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAGTTGTTCCAACTGATGCAACGCTTAGAGAGCACAACTCCACATTTTATTCGCTGCATTAAGCCCAACAATCTCCAATCACCTGAGTCATATGAACAAGGGCTTGTACTGCAACAGCTTAGATGCTGTGGGGTGCTGGAAGTGGTTCGAATATCAAGATCCGGCTTTCCAACAAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGCTTTCTTCTCTTTGATAATGCTGCATCTGAGGATCCACTCAGTGTTTCAGTTTCAATTCttcatcaatttaatattttgccCGAGATGTATCAAGTTGGCtacacaaaattatttttccgAACAGGGCAGATTGGCGTGCTTGAAGATACTAGAAACCGTACTCTTCATGGCATCTTACGTGTCCAAAGTTGCTTTAGGGGTTACCAAGCTCGTCATTCTCTCAAGAAGCTTCAAGGAGGAATCTCAACTTTGCAGTCATTTATTCGGGGAGAGAAAACAAGAAAGGCATATGCTGCTTTGCTTCAGAGACATAGAGCTGCGGTTATTATACAAAAGCAGATAAAAGCAGTGTTcgaaagaaacaaaacaaggaCTATTAGAGAAGCTACAATTGTCATTCAATCAGTCATTCGTGGATGGTTGGTCAGAAGATGCTCAGGGGATATTGGATTTTCGAAATACGGGGACATGAAGACAAAGGAGTCGGAGGAGGTTCTGGTCAAGTCATCTTTCCTGGCTGAATTGCAGCGCCGGGTACTAAAGGCTGAAGCTGCCCTGAGAGAGAAAGATGAGGAAAATGACATCCTTAACCAACGTATCCAACAATATGAAAGCAGATGGTCTGAATATGAGTTGAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTTCAATCTAGCCTCTCCATTGCTAAGAAGAGCCTTGCTATTGATGACTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGCGATGAGCGTGATTTCAACTGGGATGTGGGAAGTAATCACAGGCGCCAAGAAAGCAATGGGACACGATCAACGAGTGCTAGTTTGAGTGTTATAAGTCGGCTTGCTGAAGAATTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTGAAATCTGGTCAAGCGGAAGCAAGTTTAAACCCAGATCAAGAACTTAGAAGGTTAAAACAAATGTTTGAAGCTTGGAAAAGGGACTACTCGGCAAGATTGCGCgaaacaaaattgattataaataaaCTTGGAACTGAAGATGGCGCACTTGAGAAAATGAGGAAAAAGTGGTGGGGGAGAAGGAACAGTACAAGGATAAATTGA 3513 0.3886 MSLASKALPALHPIKSLPPGFKVNGNLTRDLMESRGDAKLRSSCLVGSTSPENVADVSEESQDDAGGTSLFNEDIAYSGKAVLFEDRTSIADEDLESVPLPFQTISVSSRESRWSDTTPSVSKKKLQSWFQLPNGNWELAKLIATSGTESVISLPDGKVLKVKQDSLVSANPDILDGVDDLMQLSYLNEPSVLYDLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNNYIEAYKRKATESPHVYAITDRAIREMIRVIIYIFSGESGAGKTETAKIAMQYLTALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCRFSSSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQNAEDYKYLKQSNCYSINGVNDAEEFRIVMEALDVVHISKEDQETVFSMLAAVLWLGNISFTVIDNENHVQAVENEGLLHVAELIGCDIEDLKLTLSTRKMKVGNDNIIQKLTQSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSKSCFKGERDQAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLFDNAASEDPLSVSVSILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARHSLKKLQGGISTLQSFIRGEKTRKAYAALLQRHRAAVIIQKQIKAVFERNKTRTIREATIVIQSVIRGWLVRRCSGDIGFSKYGDMKTKESEEVLVKSSFLAELQRRVLKAEAALREKDEENDILNQRIQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDFNWDVGSNHRRQESNGTRSTSASLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQAEASLNPDQELRRLKQMFEAWKRDYSARLRETKLIINKLGTEDGALEKMRKKWWGRRNSTRIN 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01338 1170 ProSiteProfiles IQ motif profile. 919 948 IPR000048 GO:0005515
Tsu01g01338 1170 PRINTS Myosin heavy chain signature 257 282 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 PRINTS Myosin heavy chain signature 206 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 PRINTS Myosin heavy chain signature 299 326 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 PRINTS Myosin heavy chain signature 584 612 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 PRINTS Myosin heavy chain signature 531 559 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 Gene3D - 778 846 - -
Tsu01g01338 1170 Gene3D - 541 735 - -
Tsu01g01338 1170 MobiDBLite consensus disorder prediction 1060 1074 - -
Tsu01g01338 1170 Pfam IQ calmodulin-binding motif 851 867 IPR000048 GO:0005515
Tsu01g01338 1170 Pfam IQ calmodulin-binding motif 920 937 IPR000048 GO:0005515
Tsu01g01338 1170 Gene3D Myosin VI head, motor domain, U50 subdomain 416 713 - -
Tsu01g01338 1170 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 123 172 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 MobiDBLite consensus disorder prediction 43 70 - -
Tsu01g01338 1170 PANTHER MYOSIN 9 1170 - -
Tsu01g01338 1170 ProSiteProfiles IQ motif profile. 870 899 IPR000048 GO:0005515
Tsu01g01338 1170 MobiDBLite consensus disorder prediction 1038 1074 - -
Tsu01g01338 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 892 IPR027417 -
Tsu01g01338 1170 MobiDBLite consensus disorder prediction 43 68 - -
Tsu01g01338 1170 SMART MYSc_2a 170 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 CDD MYSc_Myo8 190 833 IPR036022 -
Tsu01g01338 1170 Gene3D - 849 897 - -
Tsu01g01338 1170 Gene3D - 898 939 - -
Tsu01g01338 1170 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1170 - -
Tsu01g01338 1170 SMART iq_5 846 868 IPR000048 GO:0005515
Tsu01g01338 1170 SMART iq_5 895 917 IPR000048 GO:0005515
Tsu01g01338 1170 SMART iq_5 918 940 IPR000048 GO:0005515
Tsu01g01338 1170 SMART iq_5 869 891 IPR000048 GO:0005515
Tsu01g01338 1170 ProSiteProfiles Myosin motor domain profile. 176 845 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 Pfam Myosin head (motor domain) 178 833 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01338 1170 Coils Coil 965 1013 - -
Tsu01g01338 1170 Gene3D Kinesin motor domain 179 774 IPR036961 -
Tsu01g01338 1170 Gene3D - 355 414 - -
Tsu01g01338 1170 ProSiteProfiles IQ motif profile. 849 876 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01338 Tsu-Chr1 12681305 12697291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01338 3 1168 Myosins gene family AT1G50360 72.123 0.0 1736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01338 - K10357 gmx:100781736 2048.09