Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01335 ATGTCTAACTGCAAGGAAACAACTTCAACTACAACTACAACTAACGCCGTCGAACTTACAACAAACCAAACCGTTAAAAAACCGCCGTCAAAAGACCGTCACAGCAAAGTTGACGGACGTGGAAGAAGAATACGTATGCCAATAATATGCGCCGCACGTGTTTTCCAGTTAACACGTGAGTTAGGTCATAAATCCGACGGTCAAACTATCGAATGGCTTCTCCGTCAAGCTGAACCGTCGATTATCGCCGCTACCGGTACCGGAACAACTCCTGcttcattttcttctctttctgaGCATAAACCTTTTCTTCCTCCTTCTCCTTTCATTCTCGGTAAACGGTTAAGGTCTGAACATGATGAAGCTGTTTCTATTGCTGCACCAACTGCTCCGCCGGGGATATGGCGGCCGGATTTTGCTCAGCTTTGGAGTTTTGCTGCTGCTGCTCAACCTCCGCCGGAAGTTCTTTCAATTTCTCCGCATCAGCAACAACATCAGCATAATTCGTtgtttcatcatcaacaacagcaGAATCAACATCATCAgcatcaacatcaacaacaaggTTCTATGGGAGAAGCTTCGGCGGCGAGGTTAGGGAATTATCTTCCTGGACATTTGAATTTGCTGGCTTCGTTGTCTGGTGGTAATGGTAATTCTGGCCGCGGTGACGATGAGGATCGTTGA 687 0.4279 MSNCKETTSTTTTTNAVELTTNQTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFLPPSPFILGKRLRSEHDEAVSIAAPTAPPGIWRPDFAQLWSFAAAAQPPPEVLSISPHQQQHQHNSLFHHQQQQNQHHQHQHQQQGSMGEASAARLGNYLPGHLNLLASLSGGNGNSGRGDDEDR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01335 228 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 224 IPR005333 GO:0003700
Tsu01g01335 228 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 224 - -
Tsu01g01335 228 MobiDBLite consensus disorder prediction 156 194 - -
Tsu01g01335 228 ProSiteProfiles TCP domain profile. 30 84 IPR017887 -
Tsu01g01335 228 MobiDBLite consensus disorder prediction 155 194 - -
Tsu01g01335 228 Pfam TCP family transcription factor 30 187 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01335 Tsu-Chr1 12645781 12647777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01335 17 228 TCP Transcription Factor Family AT5G23280 58.750 3.82e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu01g01335 TCP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01335 K16221 - gmx:100795254 243.432