Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01329 ATGGGGCGTGGAAAGATCGAGATCAAGAGGATTCAAAATACAACAACAAGGCAAGTTACATTTTCCAAAAGAAGAACCGGACTCATCAAGAAAACACACGAGCTTTCGGTGTTGTGTGAAGCAAAAATTGggcttataattttttcaagtacCGGAAAGCTATTTCAATACTGCTCTGAACCCTATAGGTATGTTTTTATATGGCAGTATTGCAAGAATATGGCTATATTCTTCTTGCATTTGTATCATAATGAGGAAATGTTGAATGACATGGCAATGTTGAGGCAAGAAAGTCTTCGTATTGAATTGGGAATTCAACGCTACCTAGGAGATGACATGAACGGTTTCAAGTTTGAAGATTTGGCCAAACATGAAGAGGAATTAGAGAGTTCTCTTGCTAAAGTTCGAAGTCGTCAGATTGAGCTCTTGCAGCAACAAATCCAGAATCTACGAATCAAGGAAAGAATCTTAGAAGAGGAAAACATCAATTTGTCCAACTGGGAGCACATGAGAGTGATGGAATTTCATAATGCTGGagtggaaggaaaaaaattggggCAACAACATCAAAATGCAATGGATGAGTTTGCATTTTTTGAGGACCAACCTACAAGTAGCATTCTTCAACTTGCTCTTGCTCAGCCAACTCTTCAAGACTATCTCAAGGCTAGGGATCCAGATCagccataa 690 0.3652 MGRGKIEIKRIQNTTTRQVTFSKRRTGLIKKTHELSVLCEAKIGLIIFSSTGKLFQYCSEPYRYVFIWQYCKNMAIFFLHLYHNEEMLNDMAMLRQESLRIELGIQRYLGDDMNGFKFEDLAKHEEELESSLAKVRSRQIELLQQQIQNLRIKERILEEENINLSNWEHMRVMEFHNAGVEGKKLGQQHQNAMDEFAFFEDQPTSSILQLALAQPTLQDYLKARDPDQP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01329 229 Coils Coil 133 160 - -
Tsu01g01329 229 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Tsu01g01329 229 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Tsu01g01329 229 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Tsu01g01329 229 Pfam K-box region 83 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu01g01329 229 PANTHER MADS BOX PROTEIN 1 222 - -
Tsu01g01329 229 ProSiteProfiles K-box domain profile. 84 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu01g01329 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu01g01329 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu01g01329 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu01g01329 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu01g01329 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu01g01329 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu01g01329 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu01g01329 229 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 222 IPR031050 GO:0005634|GO:0048316
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01329 Tsu-Chr1 12570023 12573705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01329 1 225 MADS-box Gene Family AT5G23260 41.897 2.12e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu01g01329 K-box 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01329 - - gmx:100783876 233.802