Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01327 atggtTGATAAAATTTCAATTACTCGTGAATCGAGTAAATTTGATTCGGCTTATCTAAATTGGACAAACATGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAACATCCTTTGGTTTACTTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGTAAAATTGTTTCTCCAATTACTGCTACTAATCCTGCTGATTATGTCttaatgaaagagaaaaaagattttaagTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGgaagCAGAAAATATACATATCATGAATTTGACGCTATGGCAAACAAGGCCTTTTCGAATAAATTTTGCAGTTCAGAAGGTATTTCTTCTTCGGATATCGAAAAAGCGTTCTGGCACGAAATGATACATGGAGAGAAGGGTTCAGTAGAGTATGGAGTCAACATTGAGGGAAGTGTTTTTTCATGTGATCCTAATGATAAGCTTGGAACAAGCAAATTCAATTTGAAGAATTTAGCGCGGCTGCCGCAGTCTACGTTGCGTTTAGTTGACAGGGGAATTCCAggGATAACTGATCCTATGCTTTACATTGGAATGTTGTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCTGGTGCAAATAAAACTTGGTATGGTGTGCCTAGCTATGCAGCCTCTCAATTTGAAAAGACTGTGTTGAATCATGTTTATTGTAACAAAGTCTTGAAAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAAGCATGTTCCCTCCTAATGTCTTGTTACAACAAGATGTGCCGGTTTACATGGCTGTGCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGATCATATCATGCCGGATTTAGTCACGgttttaattgtGGAGAAGCAGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGGGCTGTAGCTAGCAAACGTTATGCATATCTCAGAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTGATATACAAGTCCTCAAAAGTCGGAAGTTTCAAGAACAAACCTGAAGACAAAGCATCATATCGTGCAATTGTGCCATCTTTCTTGcagcttatgcaattttatAAGACATCACTATCGCGGTTGAACAGTTCAAGAAACTCGTCAAGCTCTTCAAATACATTAGGTTCTCTAACATGCAGCATCTGCTATAGGGATTGCTATATAGCTTACTTGTTGTGCAAGAAATGTTATTCCTATCCAATTTGCCTTTTCCATGACATTGTGCCACAAACTTGCTTATGCGGGAGAAAATACACCGTTTTTAAGAGGAATGACATGTTGGAACTCGAACATGCTGCCAAACGTTTTCAACAGGAAAATGAATGCATTGATGCGTTATCGTTAACAAGTATATTCTCCTATAACATAAATGAATGCATCAAAGATTTCAAGAACGATAATTGGCATGAAGGAAAAAGTGCTAGAAGAACTTTTATCTCTATGCAAAGAAGAGTTGCGGACAACGTCAAGCACAATgttgaaaagaataaaaagaagacAAAGAATCATCATAGAAACAATCTGCCTCTGTCGGTGATGAGTAACAAAAGACCACGAATCCTTTATAATTCGAGAAAACATGATTCAAAATTGATCATAAAAGTTCCTGCAGTATCTTCTCTTTCGGCGATGTCTGAAAAATCAAAGTAA 1788 0.3546 MVDKISITRESSKFDSAYLNWTNMIPECPIYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPITATNPADYVLMKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGSRKYTYHEFDAMANKAFSNKFCSSEGISSSDIEKAFWHEMIHGEKGSVEYGVNIEGSVFSCDPNDKLGTSKFNLKNLARLPQSTLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEKTVLNHVYCNKVLKEHGENGAFQFLAQKTSMFPPNVLLQQDVPVYMAVQKPGEFVITFPRSYHAGFSHGFNCGEAVNFAIGDWFPLGAVASKRYAYLRMLPIIPYEELLCKEAMLIYKSSKVGSFKNKPEDKASYRAIVPSFLQLMQFYKTSLSRLNSSRNSSSSSNTLGSLTCSICYRDCYIAYLLCKKCYSYPICLFHDIVPQTCLCGRKYTVFKRNDMLELEHAAKRFQQENECIDALSLTSIFSYNINECIKDFKNDNWHEGKSARRTFISMQRRVADNVKHNVEKNKKKTKNHHRNNLPLSVMSNKRPRILYNSRKHDSKLIIKVPAVSSLSAMSEKSK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01327 595 Pfam JmjC domain, hydroxylase 206 329 IPR003347 -
Tsu01g01327 595 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 9 578 - -
Tsu01g01327 595 SMART cupin_9 176 346 IPR003347 -
Tsu01g01327 595 Gene3D Cupin 28 391 - -
Tsu01g01327 595 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 578 - -
Tsu01g01327 595 Pfam jmjN domain 29 61 IPR003349 -
Tsu01g01327 595 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Tsu01g01327 595 ProSiteProfiles JmjC domain profile. 176 346 IPR003347 -
Tsu01g01327 595 SMART JmjN_1 27 68 IPR003349 -
Tsu01g01327 595 SUPERFAMILY Clavaminate synthase-like 186 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01327 Tsu-Chr1 12556599 12559448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01327 25 491 JUMONJI Transcription Factor Family AT2G34880 29.963 1.39e-58 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu01g01327 JmjC 8.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01327 - - gmx:100809650 803.897