Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01318 ATGGATGAAGGGACGGATTCCTCAAAACCGAAGGACGATAAATCTTTTTTCCATTTGAAAACTGCAGCTGAACTTTTGATGTGTGATGAAAAGTCCCTTGAAGACTCATTTTGCAAACGAGTTATGGTGACTCGTGGTGATACGATAACAAAATGTCTTGATCCAGATTCTGCAGCTCTAAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGACTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGGCAAGATGCAACTTCAAAGAACTTAATTGGGGTTCTAGATATATATGGATTTGAGAGTTTCAAGACAAACAGCTTCGAGCAATTTTGTATCAACTTGACAAATGAGAAGTTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTGATTGGAGTTATATCGAGTTCGTTGATAATCAAGATGTTCTTGATCTTATTGAGAAGAAACCTGGTGGTGTTATTGCTCTTCTGGATGAGGCCTGTATGTTTCCGAGATCAACGCACGAAACATTTGCTGAAAAGCTATATCAAACACTTAGTAGCAATAAACGCTTCAGCAAGCCAAAGTTGTCGCGAACTGGTTTCACAATCAATCACTATGCTGGTGATgTCACTTATCAAACCGACCTTTTCCTTGATAAAAACAAAGACTACGTTGTTCCAGAACATGCTGCGCTGCTCAGTGCTTCCAATTGCTCCTTTGTTTCAGGACTTTTCCCACCTTTACCTGAGGAAACTATGAAATCGACAAAGTTTTCATCCATAGCCGCTCAGTTTAAGCAAcaacttcaatctttgcttGAAACATTGAATGCCACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAACCAGGGATATTCGAGAACAACGATGTGTTGCAGCAGCTTCGATGTGGCGGTGTAATGGAGGCAATTAGGATAAGTTGTGCTGGATATCCAACTAGAAAGACCTTTGATGAATTTGCTCAGCGATTTAAGATATTGGAACCTAATGTTCTAAAATCATGCCCTGATGAGGTGACTGCTTGCAAGAGGCTTCTAGATAAAGCAAATCTTAAAGGTTATCAGGTTGGAAAGACAAAAGTGTTTTTGAGGGCAGGTCAAATGGCAGAACTAGATGCATGCCGTGCTGAGGTCCTAGGAAGATCTGCAATCGTTATTCAGAAAAAAGCCCGCACGTTTATTTGTGAGAAAAAGTACAAATTATTGCGATTCTCTGCCACAATAGTACAAACTGCTGTTAGAGGACAACTTGCAAGACTTTGTTACGAACGCATGAGAAGAGAGGCTGCCTCTGTGATAATTCAGAAACAATGCCGCATGTATCTTTCAAGAAGTGCGTATAAAACTACCTATGCCAGAGCTGTTTGTATTCAAACCGGCATGCGAGGGATGGCTGCTAGAAATGAACTTAGATTCAGGAGGCGGACACAAGCTGCAATTGTTATTCAGGGTCGATACAGATGTCATCGAGCTCGTACTTATTACAAAAGGCTAAAGAGAGCAACGATTGCAGTACAGTGTTCGTGGAGGCGAACAAGAGCACGACGAGAACTTCGAAAGCTTAGAATGGCTGCTAAGGAATCCAAGGCCCTAGAAGCTGCGAAACAAAATCTAGAAAAGCAAGTTGAGGAACTAATTTCGTCTCTAGAATCAGAGAAGAGAATGAGGGAAGCCGAGACAcaggaaaatgaaaaattacaaCATGCTTTGGAAGAGATGGAGGTTCGGTTCAAAGAAACTACAACTCAGTTCGAAGAAACTAAAACGAAACTCGCTCAGGAATGTGAGGCTGCGAAGAAATTGGCTGAGCAAACACCAACTATAcgtgaaaatgaaaatgaaaataatgttGTTGACAATGAATTGATAAATAAGCTTACTGCAGAGAATGAAAAACTCAAGGATCAGGTTAAATCATTGGAACAGAAAGTTGACGAGACAGAGAAGAAATATGAAGAATGTAGCAGGCAAAGTGAGGACCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGCTAAAGACAAAATTGCAAAGGCTTGAAGAAAAATTTTCTGATTTGGAATCTGAGAATCAAATTTTTCGGAAGCAAGCGCTGAGTTCAACATCCCAGAGAATGACAGACAAAGTAGCTGCAATTCCGGCACCAGTAAAAACACTTAATTCAACAGAAACTGTGAGGAGATCTCATATGGAGAGACACCAAGAAAGTGTAGATGCTCTTTTCAAATGTGTGACAAAAGATCTTGGATTCTGTGAAGGGAAACCTGTTGCAGCATTTACCCTTTATAACTGTTTACTACATTGGAAATCTTTTGAAGCAGAGAAGACAAGTATATTTGATCGTCTTATTCAGCTCATTGGTTCTGCGATAGAGGATCAGGATAATAACAATTGTATGGCTTATTGGCTGTCGAATACATCTGCTTTGTTTTTCCACCTTCAACGATGTCTAAGAGCACCAGCACGAAAACCACCCACTCCAACAGGGTTTTTTGGGAGGATGACCCAGGGTTTCCGCTCATCCAATAGTCTTTCAAGTGGTGCATTTGATGTAGTGCAACAAGTTGATGCGAAGTATCCAGCTTTGCTGTTCAAGCAACAACTTGCAGCTTATGTAGAAAAAATATATGGAATTGTTCGAGAAAATATGAAGAAAGAATTGTCCCCTCTGCTTTCTTCTTGCATCAAGGATCCCAAAGACGGCAGCAGCCAACCAACTGGTTCATGGCACGACATTACTGAATGCCTTAATAAATTTCTCAatgttttgaaagaaaattatGTGCCTCCCGTTCTAATTCAAAAGGTATTTAATCAGACGTTTCAATACATCAACGCAGAAATCTTTAACAGTCTTATATTGCATAAAGAATGTTGCACACTCAACAATGGAGAATATGTAAAATCAGGGTTAGCTGAACTAGAACAATGGTGTAATGAAGTAACCGAAGAGTATTATGGCACGGCTTTGGATGAACTCAACCATTCAAAACAAGCAGTTAGATTCATGGCTACTGAAAAGAAGGATGAACTATCCTATGATGATCTTACAAATGACATCTGCCCTGTGCTGAGTCCTCAACAGCTTTATAGAATATGTACACTATTCGTGGATGAAAATGACAATACCAAGAGTGTATCAACAGAAGTCACTACTAGAATAAAGCTTCTAATGACAGATGATGTAGTTGATGATGACAAATCCTTCTTGTTAGAAGACCATTCAAGTGTTCCTATTATTGTTGAAGAGATTTCTCATACAAATCAAGATAAGACAattccaaaagtaaaaccacCTGCAGAATTACTTGAGAGTGCAAACTTCCAATTTTTACATGATTATAGTTAA 3420 0.3833 MDEGTDSSKPKDDKSFFHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKCLDPDSAALSRDALAKIVYSRLFDWIVDKINNSIGQDATSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTLSSNKRFSKPKLSRTGFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLSASNCSFVSGLFPPLPEETMKSTKFSSIAAQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNDVLQQLRCGGVMEAIRISCAGYPTRKTFDEFAQRFKILEPNVLKSCPDEVTACKRLLDKANLKGYQVGKTKVFLRAGQMAELDACRAEVLGRSAIVIQKKARTFICEKKYKLLRFSATIVQTAVRGQLARLCYERMRREAASVIIQKQCRMYLSRSAYKTTYARAVCIQTGMRGMAARNELRFRRRTQAAIVIQGRYRCHRARTYYKRLKRATIAVQCSWRRTRARRELRKLRMAAKESKALEAAKQNLEKQVEELISSLESEKRMREAETQENEKLQHALEEMEVRFKETTTQFEETKTKLAQECEAAKKLAEQTPTIRENENENNVVDNELINKLTAENEKLKDQVKSLEQKVDETEKKYEECSRQSEDRMNQIIETESKMIELKTKLQRLEEKFSDLESENQIFRKQALSSTSQRMTDKVAAIPAPVKTLNSTETVRRSHMERHQESVDALFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQLIGSAIEDQDNNNCMAYWLSNTSALFFHLQRCLRAPARKPPTPTGFFGRMTQGFRSSNSLSSGAFDVVQQVDAKYPALLFKQQLAAYVEKIYGIVRENMKKELSPLLSSCIKDPKDGSSQPTGSWHDITECLNKFLNVLKENYVPPVLIQKVFNQTFQYINAEIFNSLILHKECCTLNNGEYVKSGLAELEQWCNEVTEEYYGTALDELNHSKQAVRFMATEKKDELSYDDLTNDICPVLSPQQLYRICTLFVDENDNTKSVSTEVTTRIKLLMTDDVVDDDKSFLLEDHSSVPIIVEEISHTNQDKTIPKVKPPAELLESANFQFLHDYS 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01318 1139 ProSiteProfiles Dilute domain profile. 804 1084 IPR002710 -
Tsu01g01318 1139 ProSiteProfiles IQ motif profile. 423 452 IPR000048 GO:0005515
Tsu01g01318 1139 CDD MyosinXI_CBD 755 1106 IPR037975 GO:0007015
Tsu01g01318 1139 ProSiteProfiles IQ motif profile. 473 500 IPR000048 GO:0005515
Tsu01g01318 1139 Coils Coil 532 611 - -
Tsu01g01318 1139 Pfam IQ calmodulin-binding motif 450 469 IPR000048 GO:0005515
Tsu01g01318 1139 Pfam IQ calmodulin-binding motif 497 517 IPR000048 GO:0005515
Tsu01g01318 1139 Pfam DIL domain 960 1061 IPR002710 -
Tsu01g01318 1139 PANTHER MYOSIN 638 1136 - -
Tsu01g01318 1139 PANTHER MYOSIN 2 596 - -
Tsu01g01318 1139 PANTHER MYOSIN HEAVY CHAIN 638 1136 - -
Tsu01g01318 1139 PANTHER MYOSIN HEAVY CHAIN 2 596 - -
Tsu01g01318 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 547 IPR027417 -
Tsu01g01318 1139 ProSiteProfiles IQ motif profile. 496 525 IPR000048 GO:0005515
Tsu01g01318 1139 Gene3D Myosin VI head, motor domain, U50 subdomain 6 266 - -
Tsu01g01318 1139 Gene3D - 104 288 - -
Tsu01g01318 1139 PRINTS Myosin heavy chain signature 94 122 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01318 1139 PRINTS Myosin heavy chain signature 147 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01318 1139 ProSiteProfiles IQ motif profile. 448 474 IPR000048 GO:0005515
Tsu01g01318 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 450 IPR027417 -
Tsu01g01318 1139 SMART DIL_2 959 1066 IPR002710 -
Tsu01g01318 1139 Gene3D - 332 395 - -
Tsu01g01318 1139 SMART iq_5 470 492 IPR000048 GO:0005515
Tsu01g01318 1139 SMART iq_5 495 517 IPR000048 GO:0005515
Tsu01g01318 1139 SMART iq_5 518 540 IPR000048 GO:0005515
Tsu01g01318 1139 SMART iq_5 422 444 IPR000048 GO:0005515
Tsu01g01318 1139 SMART iq_5 399 421 IPR000048 GO:0005515
Tsu01g01318 1139 SMART iq_5 447 469 IPR000048 GO:0005515
Tsu01g01318 1139 Gene3D Kinesin motor domain 88 327 IPR036961 -
Tsu01g01318 1139 ProSiteProfiles Myosin motor domain profile. 1 397 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01318 1139 Coils Coil 686 720 - -
Tsu01g01318 1139 Gene3D - 450 497 - -
Tsu01g01318 1139 Gene3D - 498 547 - -
Tsu01g01318 1139 Gene3D - 400 449 - -
Tsu01g01318 1139 SMART MYSc_2a 1 398 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01318 1139 Pfam Myosin head (motor domain) 12 385 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g01318 1139 ProSiteProfiles IQ motif profile. 519 548 IPR000048 GO:0005515
Tsu01g01318 1139 Coils Coil 637 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01318 Tsu-Chr1 12491750 12502399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01318 3 1136 Myosins gene family AT5G43900 59.848 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01318 K10357 - gmx:100788123 1734.15