Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01310 ATGTCAAAAGCAAAAGAAGAGTTAAGCCAAATTATTGGCAAAGGAAACTTGGTTAAAGAATCAGACATAACAAAACTCCCTTATTTACAAGCAATAGTAAAAGAAACTTTTAGATTACATCCGGCAGTTCCACTTTTACTACCAAGAAAAGCTGAAAATGACTTAGAAATTAATGGTTATAAAGTCCCAAAAAATGCACAAGTTTTTGTTAATGTTTGGGCTATTGGAAGAGATGCAAATTTATGGGACAATCCTAATGAATTTTTGCCGGAAAGATTTTTGGGGTCagaaattgattttaaaggtAGAAATTTTGAGTTGACACCATTTGGTGGTGGGAGAAGATTATGTCCTGGATTACCATTAGCTATAAGGATATTATTTTTGATGTTGGGTTTGTTTATTAATTGTTTTGATTGGGAACTTGATGGTGGGATTAAAGCTGAAGATATGAACATGGATGATAAATTTGGACTTACTTTGGAGAAAGCTCAAGCTTTGTTAGCTGTTCCAATTAAAGTAAATAAGCAATAA 534 0.3165 MSKAKEELSQIIGKGNLVKESDITKLPYLQAIVKETFRLHPAVPLLLPRKAENDLEINGYKVPKNAQVFVNVWAIGRDANLWDNPNEFLPERFLGSEIDFKGRNFELTPFGGGRRLCPGLPLAIRILFLMLGLFINCFDWELDGGIKAEDMNMDDKFGLTLEKAQALLAVPIKVNKQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01310 177 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 110 119 IPR017972 GO:0005506|GO:0016705
Tsu01g01310 177 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 175 - -
Tsu01g01310 177 PRINTS P450 superfamily signature 108 117 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 PRINTS P450 superfamily signature 117 128 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 Pfam Cytochrome P450 2 164 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 Gene3D Cytochrome P450 1 175 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 PRINTS E-class P450 group I signature 107 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 PRINTS E-class P450 group I signature 117 140 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01310 177 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 175 - -
Tsu01g01310 177 SUPERFAMILY Cytochrome P450 1 166 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01310 Tsu-Chr1 12361788 12362321 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01310 1 173 Cytochrome P450 AT2G45550 58.960 3.78e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01310 - - lja:Lj2g3v0039250.1 277.715