Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01304 ATGAGTTCCAGCTCTAAACAAACTGAGCTTCCTGCCGAGGTGGAAAACGTCGACGGTGCTTACCTCTCTGCGGCGATATTATGTTTTAGTCGCATTTTTCCGGCGATCCTAAATGCCGCCGTTGATCTGAATTTGTTTGATATCATATCTAAGTTACAAAATTCATCAAGTGGTAAAAATTCTAGTTTCTCTGCTTCTGAAATTGCTTCTGAGCTTCCAAATCAACACCCTGAATTGGCTGAGAGGCTTGAACGCATGTTGAATGTGTTGGCTAGCTATTCTCTTCTCACTTGTTCAATCCGTACCAATGAAAATGGTAAGAGAGAAAGGGTTTTCGCTCTCTCTTCAATTGGTCAATACTTTGCATATGATAAAGATGGAGGCTCTTTTGGTCCACTCTCAACATTAGTGCATCGTGGATACAATAGTGTTTGGTATGATGTAAAAGATGCAATTATAAACCCTAACAACAATGACCATTTTAATAAAGTTCATGGATCACCTGCTTATCAATATTTAGAGAAAAATCAAGAgctaaatcaaatttttaacaaagcaaTGGCTCATTCTGGTCCATTAGAAATGCAAAGGGTCCTTACATTATATAAAGGATTTGAGGGTGTCTCAACATTGGTTGATGTTGGAGGTGGAGTAGGGAATGCTTTGAAACAAATTATATCAGAATATCCTTCAATAAAAGGTATCAATTTTGATTTGCCACAAGTGATTCAAGATGCACAACCTCATTCAgGTATAGAGCATGTTGAAGGAAATATGTTTGAAAGTGTTCCAACTGGTGATGCCATATTACTAAAGCTTGTATGTCACAATTGGGCAGATGAAGAATGTGTGAAGTTTTTAAGAAATTGTCACAAAGCTTTGCCAAAACATGGAAAGagcaatgAAAGTGAAAGTGAAACAGAGGTGGAGAAGAATAATACCTCTGCctccaacaaaacaaaaacgtCTTCCGCTATCACAAATACATCATCGTACTATCTCAGTCCCTCTGACAATCCAGGAACGCCACTCGTGGCTGCGACGCTCAAAGGCGAGAACCGCCGCAATTGGGCGCGTTCCATGAGGACGGCACTTCGCGCAAAAAACAAGTTGGGTTTCATCGATGCAACGATCAAGAAACCTGCGAGGACAGATCCAGATTTCTACAATTGGGAGAGAGCCGACTCGATGGTCATGGCGTGGATAATTAATGCTGTAGATCCGGTTTTACATGGAAGCATCTCTCATGCATCAACTGCAAGAGATATATGGGAGGATCTAGAAGAGAGATTTGCTCAAACTAACGCTCCAAGAATCCACCAGTTATGGCGAATGTTATGTTTAATGGAGCATGAACCAGACATGGCTGTGACAGAATATTACACCAAGTTCAAAAGCCTCCTTGATGAACTAGGTGAGTTACAACCACTTCCAGAGTGTACCTGCGGTGCATCTAAAGAGATTCTGAAGAGAGAAGAAAGTCAACATGTGCACCTCTTCCTTGGAAGTCTTAACAATGAGCGATTTGAGCATGTTAAGGCAACCGTGTTGAATAGTGAACCTTTGCCTCCGCTACGACGTGTCTTCAATCACATCCTCAGAGAAGAGGCCAGGATCACAAGTGAAAGGGATAAGATGGTTGCAGTCAAGGGAGAATCAGGAGGATCTGCTTTTTATGCTCCAAATCAAAATAGGCTAAGAAGAGATGGACAGAAGTCAAAATGTGATCATTGTGGCAAAGTTGGTCACATTAAGGCAGGTTGCTTTGAGATTATAGGATATCCGGAAAACTGGGGCACGCGAAGGACGCAGTGTTATCCAAGAGACAATGGAGGACAGCCCAGAGCTCACCATGCACATGTTACTGAAAAtcaaaaagaagagaaagaaacgGTGCAGGGACGAGCGTTGCATGGTTCGCGTGTGATGTATCAGGACTCTTTTGATGTTGGTAATGATATGTTGTGCAAGGATAATAAATGGATCTTGGACAGTGGTGCATCACACCACATGACTCCTCTCTTATCCTTAATGAGAGGGGTAACCAAGATTGAGAAACCTTTCTATATCACTGTTCCTACAGGGAATGCAGTGTTAGTAGAGAAAATGGGGATCATTGATCTTAGCAAAGACATAACTTTGCACAATGTTTTATTTGTGCCTAAGTTTGATTgcaatttgatttcaatttgtCAATTGACTAGTGATTTAAATTGCTTTATAACTTATCATCTTAATAATTGTTTGATACAGGACCTTGTCACGAAGAAGAAGATTGGTTTCGGTGATGTACATGGTGGGGTTTACGTGCTGAGGCAACAAGTTCAAGGGTCAGCTTTCAAGGCTCATCATTAA 2355 0.3979 MSSSSKQTELPAEVENVDGAYLSAAILCFSRIFPAILNAAVDLNLFDIISKLQNSSSGKNSSFSASEIASELPNQHPELAERLERMLNVLASYSLLTCSIRTNENGKRERVFALSSIGQYFAYDKDGGSFGPLSTLVHRGYNSVWYDVKDAIINPNNNDHFNKVHGSPAYQYLEKNQELNQIFNKAMAHSGPLEMQRVLTLYKGFEGVSTLVDVGGGVGNALKQIISEYPSIKGINFDLPQVIQDAQPHSGIEHVEGNMFESVPTGDAILLKLVCHNWADEECVKFLRNCHKALPKHGKSNESESETEVEKNNTSASNKTKTSSAITNTSSYYLSPSDNPGTPLVAATLKGENRRNWARSMRTALRAKNKLGFIDATIKKPARTDPDFYNWERADSMVMAWIINAVDPVLHGSISHASTARDIWEDLEERFAQTNAPRIHQLWRMLCLMEHEPDMAVTEYYTKFKSLLDELGELQPLPECTCGASKEILKREESQHVHLFLGSLNNERFEHVKATVLNSEPLPPLRRVFNHILREEARITSERDKMVAVKGESGGSAFYAPNQNRLRRDGQKSKCDHCGKVGHIKAGCFEIIGYPENWGTRRTQCYPRDNGGQPRAHHAHVTENQKEEKETVQGRALHGSRVMYQDSFDVGNDMLCKDNKWILDSGASHHMTPLLSLMRGVTKIEKPFYITVPTGNAVLVEKMGIIDLSKDITLHNVLFVPKFDCNLISICQLTSDLNCFITYHLNNCLIQDLVTKKKIGFGDVHGGVYVLRQQVQGSAFKAHH 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01304 784 Pfam O-methyltransferase domain 145 299 IPR001077 GO:0008171
Tsu01g01304 784 Gene3D - 2 121 IPR036388 -
Tsu01g01304 784 MobiDBLite consensus disorder prediction 613 628 - -
Tsu01g01304 784 Pfam gag-polypeptide of LTR copia-type 391 538 - -
Tsu01g01304 784 PANTHER O-METHYLTRANSFERASE 1 300 IPR016461 GO:0008168
Tsu01g01304 784 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 300 - -
Tsu01g01304 784 Gene3D Vaccinia Virus protein VP39 124 318 IPR029063 -
Tsu01g01304 784 MobiDBLite consensus disorder prediction 295 309 - -
Tsu01g01304 784 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 369 IPR016461 GO:0008168
Tsu01g01304 784 MobiDBLite consensus disorder prediction 609 628 - -
Tsu01g01304 784 Pfam gag-polypeptide of LTR copia-type 336 382 IPR029472 -
Tsu01g01304 784 MobiDBLite consensus disorder prediction 295 323 - -
Tsu01g01304 784 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 140 299 IPR029063 -
Tsu01g01304 784 Pfam Dimerisation domain 36 91 IPR012967 GO:0046983
Tsu01g01304 784 SUPERFAMILY "Winged helix" DNA-binding domain 18 125 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01304 Tsu-Chr1 12248791 12256485 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01304 1 299 Monolignol Biosynthesis Gene Families AT5G54160 43.000 5.17e-80 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01304 - - gmx:106794104 431.795