Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01302 ATGGCAAACCACATTGATATGATTTCAACTATCAATGATGTTCCCCGTAATTGGAGGTTAATAGTAAGGGTTGTTCGGTTGTGGGGAGTTCCTGAGttcaacacaccaaaccaaTTTAGATCACTAGAACTGGTTTTGATGGATTCTGAGGGAACTAGGATTCATTGCAGTGTGAAGAAAACACTAATTTACCTGTTTCAGAAACAACTATCTGAAGGTGTCGTGTACACCCTTACCACGTTTGATGTGGTCAGAAGCACTGGCGAATACCGTCCTACAAGTCATGTTTATAAGTTGGATGCAACTTATAATACTAAATTCAGCAGATCTGATAGCATTGTTTTTCCAGAGATAGTCTACACTTTCACACCACCTTCTGAtgttttcaaaaatgattttaataGAGATTTCTTGATtgATGTTGTGGGAGTGCTGGCTTCTGTGGGTAAGGAAAGGGAGTATGTCAAAAATGGTAAACGGACCAAGGTCATCACCATAGCGTTGAACAATAATGGGTACTCTTATCAATTAACACTGTTTGGTCACTATGTTGATGAACTTAACTCTTTCCTTGCATCCGGTGAGACAATGAATGCTGTTGTTGCActtttgtttgcaaaatctaAGATCTTCCAAGGAAAACCAGTCCTACAGAATTCTATAAATGCTTCGAAGCTTATGTTTAACCCTGAAATTGCTGAAAATGAATCTCTGAAAAATATGGTGACCACTACTGCTGACTCGCCAAACAGTGGTATAGGTAAGCTCCAAGACTTGGAGACAATTAGGTTTGAAGATGAAATGTTGGTTTCGACGCCGCGGTCTACCATTGATGGTTTGTCTGGGAGTAAGAAGGGCTCCGCGTTTGTTGTTCTGGGCACAATTACAGATATTGTTCGACATGGTGGATGGTGGTACACTGCACACCATTGCCACAAAAAGGTGTATCCAGCTGATGGCATGTACTACTGTGGCAAATGCGTCAAGCATGTTGTTGATGTCACTCCTAGATATATGTTGAAGTTAGAGGTCACAGATGAGACGGGCACTACCACCTTTGTCCTGTTTGACCAGGATGCAATGGTGTTGCTTAACAAAGCTTGTGCTGATCTCATTCAATCCCTCAATCATGATCCAAATGAAGACACTTTGCCTAAGCCAATTGCTGACTTGAAAGGGCAAAGTTTTCTGTTCAAAGTTGAAGCTGGTGATGAAAATGATGGCAGATTTCAGCCATCATACAAGGTGAAAAAGTTTACTGGGGATGATTTTATGCTTAGGAAGTTTAAAGATCCAACAACTGTTGAATCTGAAAATGTAGATCCACTTGATAAAGGAAAGGCTGTTGTAGTTGATGCTGCTGTCGCAGATGTGGCACAGGACCTGCTACCAAGGTTCTCTGAAGCTTCCCCTGATTTTGAAACTGGCTCGACGAGTCAATCAGTCGGAGTTGTGGATTTGGATGCTGATTCGGATGAGACCCCTGATACGAAGAGATTGAAGGATAAGGAGAGTGACCCTGATTCTGCATCAAAGGAAATTCTGAAAAAAGTCAAGCTTGAGAAAGAATAG 1572 0.4027 MANHIDMISTINDVPRNWRLIVRVVRLWGVPEFNTPNQFRSLELVLMDSEGTRIHCSVKKTLIYLFQKQLSEGVVYTLTTFDVVRSTGEYRPTSHVYKLDATYNTKFSRSDSIVFPEIVYTFTPPSDVFKNDFNRDFLIDVVGVLASVGKEREYVKNGKRTKVITIALNNNGYSYQLTLFGHYVDELNSFLASGETMNAVVALLFAKSKIFQGKPVLQNSINASKLMFNPEIAENESLKNMVTTTADSPNSGIGKLQDLETIRFEDEMLVSTPRSTIDGLSGSKKGSAFVVLGTITDIVRHGGWWYTAHHCHKKVYPADGMYYCGKCVKHVVDVTPRYMLKLEVTDETGTTTFVLFDQDAMVLLNKACADLIQSLNHDPNEDTLPKPIADLKGQSFLFKVEAGDENDGRFQPSYKVKKFTGDDFMLRKFKDPTTVESENVDPLDKGKAVVVDAAVADVAQDLLPRFSEASPDFETGSTSQSVGVVDLDADSDETPDTKRLKDKESDPDSASKEILKKVKLEKE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01302 523 MobiDBLite consensus disorder prediction 471 485 - -
Tsu01g01302 523 Gene3D - 264 431 IPR012340 -
Tsu01g01302 523 CDD RPA1_DBD_C 279 424 IPR013955 -
Tsu01g01302 523 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Tsu01g01302 523 CDD RPA1_DBD_A_like 19 107 - -
Tsu01g01302 523 PANTHER REPLICATION FACTOR A 1, RFA1 20 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu01g01302 523 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 375 - -
Tsu01g01302 523 MobiDBLite consensus disorder prediction 468 523 - -
Tsu01g01302 523 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Tsu01g01302 523 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Tsu01g01302 523 MobiDBLite consensus disorder prediction 491 523 - -
Tsu01g01302 523 Pfam Replication factor-A C terminal domain 292 405 IPR013955 -
Tsu01g01302 523 CDD RPA1_DBD_B_like 140 242 - -
Tsu01g01302 523 Gene3D - 115 249 IPR012340 -
Tsu01g01302 523 Gene3D - 3 109 IPR012340 -
Tsu01g01302 523 SUPERFAMILY Nucleic acid-binding proteins 280 424 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01302 Tsu-Chr1 12242186 12244617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01302 18 405 Core DNA Replication Machinery Family AT4G19130 22.565 3.29e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01302 - - mtr:MTR_2g048560 381.719