Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01299 ATGTCATTAGTACCAACTGACCCCGACTATTTAAACAAATCCGACAATGCATGGCAACTAGTCGCGGCCACATTGGTCGGTCTCCAAAGTGTTCCAGGACTAATAATATTATACGGCGGAgcggttaaaaaaaaatgggcaGTGAATTCAGCATTCATGTCACTCTATGCATTTGCTTGTGTATATCTTTGTTGGGTTATTTGGGGTTATAGATTATCATTTGGTGATAAACTTTTACCATTTTGGGGAAAACCAGCACTTGCACTTGATGAAGCTTATCTTTTCAAAAAAGCATTTTCAGGGAATTTTCCAAATGCTACTATGATTTATTTTCAAGGTGTTTTTGCTGCTattactttgattttgataGCTGGTGCTTTGTTGGGAAGAATGAATTTCTATGCTTGGATGTTGTTTGTGCCTTTATGGCTCACTTTTTCTTATACTTTTACTGCTTTTAGTATTTGGAGTCCTAATGGCTTTTTGACCAAGTTGGGGATTATTGATTATTCTGGAGGTTATGTTATTCATTTGTCTTCTGGTGTTGCTGGTTTCACAGCTGCATATTGGGTTGGACCGCGTCTAAACAAAGACAGGGAAAGGTTTCCACCAAACAATCTCCTTCTCATGCTCGCCGGAGCAGGGCTATTATGGATGGGATGGACAGGATTCAATGGAGGAGATCCTTACTCAGTTGGAGTAGATGCTTCCTTGGCTGTGTTGAACACACATGCTTGTACTGCTACTAGTTTGCTTACTTGGGTTTTACTTGATGTCATCTTTTTCAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATTACTGGTTTGGTTTGCATTACCCCTGCTGCAGgAGTTGTACAAGGATGGGCAGCCCTTATAATGGGAGTATTCTCAGGCTCAATTCCATGGTTCACTATGATGGTAATTCACAAGAGATCAAAGTTACTTCAAAAGGTAGATGACACAATGGCAGTGTTACACACTCATGCAATTGCAGGAAGTCTTGGAGGAATTCTAACTGGTCTCTTTGCTGAGCCAAAATTGAATGCATTGTTCTTTGGTGCTTATAATAAATATGTTGGTTTATTTTATGGATTACAAATGAACATGGCTGGTACTGGATTCAGACAAATTGGAATCCAATTAATTGGAattttgtttgttatctttGTTAATGTTGTAAGTACAAGTTTGATATGTCTCTTCATTCGTCTTTTCGTTCCATTGAGAATGTCTGAAGAGGATATGGAAATCGGTGACGAAGCTGCTCATGGTGAAGAAGCTTATGCAATTTGGGGTCAAGGTGATAAACTTGAAAATTCAAGTTCAAAATATGGAAGTTCTTTGTATGAAGATGTTGAAGTTGCCGCGACAAAGAATAAGCGCGGTGGCCAGATTGAGATTATGCCTAAAGATGGAGCTCATGGTAGAGATGAGCTAGGCTTGAAAAATAGAGCTCATGGTGGGGATGAGCTAGGCTTGAAGATGGAGCTCATGCTGGAGATGAGCTAA 1518 0.3867 MSLVPTDPDYLNKSDNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVYLCWVIWGYRLSFGDKLLPFWGKPALALDEAYLFKKAFSGNFPNATMIYFQGVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLTKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWMGWTGFNGGDPYSVGVDASLAVLNTHACTATSLLTWVLLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNALFFGAYNKYVGLFYGLQMNMAGTGFRQIGIQLIGILFVIFVNVVSTSLICLFIRLFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYEDVEVAATKNKRGGQIEIMPKDGAHGRDELGLKNRAHGGDELGLKMELMLEMS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01299 505 TIGRFAM amt: ammonium transporter 15 431 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu01g01299 505 PANTHER AMMONIUM TRANSPORTER MEP2 6 470 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu01g01299 505 SUPERFAMILY Ammonium transporter 10 413 - -
Tsu01g01299 505 PANTHER AMMONIUM TRANSPORTER 6 470 - -
Tsu01g01299 505 Pfam Ammonium Transporter Family 17 431 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tsu01g01299 505 ProSitePatterns Ammonium transporters signature. 169 194 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tsu01g01299 505 PRINTS Rhesus blood group protein signature 239 261 IPR002229 GO:0005887
Tsu01g01299 505 PRINTS Rhesus blood group protein signature 208 226 IPR002229 GO:0005887
Tsu01g01299 505 PRINTS Rhesus blood group protein signature 112 128 IPR002229 GO:0005887
Tsu01g01299 505 Gene3D Ammonium transporter AmtB like domains 3 435 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01299 Tsu-Chr1 12212815 12219283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01299 106 467 Inorganic Solute Cotransporters AT2G38290 61.326 1.86e-144 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01299 K03320 - gmx:100787856 810.061