Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01297 ATGTCCATTCATCATGGTCGTGGCAGTGAAGCTAACGGAATACATTTCTACCAAACTATTCAACTTCGTCACTTGCAAGACCAACAATTAATGATTCCAAGGAATTTTGTAGAGAGTTATTGGAAAGATGTATCAAATCCAATATCCCTTAAACTTCCAAACGGCTCTGATTGCAAAATGTATTGGGTACAACAAGGTCACGATATTTGCCTTCAGAATTGGAAAAGGTTTGCACGGTTGCTTAGATGCGGAGagattttagtttttcaatatAAAGGAGGATCAGATTTTCATGTCATTATATTTGATGATAGTAAACTAGAAATTGACTATTCAAGTATGAGGTACAATGATgaccaagaagaagaagagcatGAAAATACCGAACAACCcctcaagaaaaagaaaatcgaCTCAAATGATATTGCTACTACTGTTGCTACACCTCAAGGGACAACAAACATTGACAAGAATGAAACCCAGCAAAATGTCTTAGAGGCTAATAGAAACAAAGCAGGCAGCGGTGAGAAAGCTATGAAATGCACAAAAACTAAAGATGCAAATAAGAGAAGCTGCACTAACTCTCATCCCGACGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTCATGTGGAAGGTGATACATCATTGAGGATACCTAGTCACTTTTCGAAAGAATACAAGAACGAGTTGTTGCAAGGGAATGCAGCGATTAGAAGTGCTGGTGAGGACAGGACATGGCACATGACAATAACATGGGATAAATGCAATGAAAATTTTAGAATAACTGGTGGTTGGAAGTCATTTTCACAGGAACATAAATTGCAAGTAGGTGATCTCTGTAAATTTGAGATGACTCCACGGGAACCACTTTCATTCACCATTACTATTACTCCATCTACGAAGGAACCATGCTCGGAGCAGTTTCAAGagACTAATAGTTACAGAGAAGGTATGGGTAAAAATGCTAAGAAATGCACCAAAACAAAATATGGGAATGAGAGAAGCTGCACAAACTCTAATCCCAATGAGAATGCCAGTTTCACTCTCACATTACCGCAATCTTATGTCGAAGGTGGTAAATTAAGGCCGAGGATACCTATTCACTTTTCGAAAGAATACAAGAATGAGTTGTTGCAAGGGAGTGCAACGATTAGACGTGCTGGTGAGGACAGGACATGGCACATGACATTACGATCGGATAATAATAAAGGAAGTTTTAGAATAACAGGTGGTTGGAAGTCATTTACACAGGAACATAACTTGCAAGTTGGTGATGTCTGTAAGTTTGAGATGACTCAACGAGAACCACTTTCATTCACCATTACTATTACTCCATCTACAAAGGAACCGTGTCTGGAGCAGTTTCATGAAAAACGAGTCCAAGAAAAATCGGAGACAACACCGTCGCCGGTAGATGATATGGAATATGTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGCCTAGAAACAGATGATTCTGAAACTCcgaatttaaaaaacaaattcatgGTTTCTGTAACATCATTGTTCATGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATTTAGTGGAAATTCAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGACTATGGGTGGTTCACTAAAGGCAGTGTGCCTGTCATGTTTTTGGGACTGCTCATTGGTGCTAATCATAGACTCTTGTCATCTTGGAAGCCGGTGATTGAGTCGCAGAAAAGAAAATTGTTGGTGTGGAACGGTAAACATTTGTTTTTTGGAGGTCGTATAATTGTTAATTTACTCTGTATTGGCGAGGCTCCCCTTGTATTTCTTCTAATTTTTCAAACACCAAAGAGGGTTATAAAAGAATTGGTTGCAATACAGAGAAGGTATGGAAGTTTGTGTGATGCTGCGATCGGTACGGACCTTCAAAGAGCAGGTATTCAACAATCTTTATGGTGGAGAGATTTGTTAAGTGCTGAGTTATTTGGATCACAACCAAACAATCTAGTTCATGAACGGTGTGAAGCATCGATTGGGGAATTGTACAAAGGTCAATTTTGGAGCGATAACTGGTCAGGATCTGACTGTTTTATGCAGGTTTTTCTGTGTTTGTATGTGATGGCAGAAGACAGGAATTGTTCAGTAGCAGATGTAGGTTATTGGTCTGAAGGTGTTTGGCATTGGAATATGTCTTGGCGATGTCCACTGCTGGGTTTGGAAGAACCTGATAGAGCTGAGTTGATACTGCTGCTGGACGGGATTTCTCCTAATGCGAGACTTAGGATAAGTGGATTTGGATGTTGGATCCGAATTTGGAGTGGCGGCATATTTGACTGGTTTGGTGTGCAAGGGTCTGTGGAGCATTTTCTGCAATTTGGCTga 2415 0.388 MSIHHGRGSEANGIHFYQTIQLRHLQDQQLMIPRNFVESYWKDVSNPISLKLPNGSDCKMYWVQQGHDICLQNWKRFARLLRCGEILVFQYKGGSDFHVIIFDDSKLEIDYSSMRYNDDQEEEEHENTEQPLKKKKIDSNDIATTVATPQGTTNIDKNETQQNVLEANRNKAGSGEKAMKCTKTKDANKRSCTNSHPDENPNFTLKLSRSHVEGDTSLRIPSHFSKEYKNELLQGNAAIRSAGEDRTWHMTITWDKCNENFRITGGWKSFSQEHKLQVGDLCKFEMTPREPLSFTITITPSTKEPCSEQFQETNSYREGMGKNAKKCTKTKYGNERSCTNSNPNENASFTLTLPQSYVEGGKLRPRIPIHFSKEYKNELLQGSATIRRAGEDRTWHMTLRSDNNKGSFRITGGWKSFTQEHNLQVGDVCKFEMTQREPLSFTITITPSTKEPCLEQFHEKRVQEKSETTPSPVDDMEYVGNYGEGISRSCLETDDSETPNLKNKFMVSVTSLFMLVIPSEFLKRHNIFSGNSVELKVGEGTWFVEVSYNQHLDYGWFTKGSVPVMFLGLLIGANHRLLSSWKPVIESQKRKLLVWNGKHLFFGGRIIVNLLCIGEAPLVFLLIFQTPKRVIKELVAIQRRYGSLCDAAIGTDLQRAGIQQSLWWRDLLSAELFGSQPNNLVHERCEASIGELYKGQFWSDNWSGSDCFMQVFLCLYVMAEDRNCSVADVGYWSEGVWHWNMSWRCPLLGLEEPDRAELILLLDGISPNARLRISGFGCWIRIWSGGIFDWFGVQGSVEHFLQFG 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01297 804 Gene3D - 9 106 IPR015300 -
Tsu01g01297 804 MobiDBLite consensus disorder prediction 141 155 - -
Tsu01g01297 804 PANTHER B3 DOMAIN-CONTAINING 309 445 - -
Tsu01g01297 804 CDD B3_DNA 348 445 IPR003340 GO:0003677
Tsu01g01297 804 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 309 445 - -
Tsu01g01297 804 Gene3D - 328 449 IPR015300 -
Tsu01g01297 804 Gene3D - 180 302 IPR015300 -
Tsu01g01297 804 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 298 - -
Tsu01g01297 804 SUPERFAMILY DNA-binding pseudobarrel domain 344 443 IPR015300 -
Tsu01g01297 804 MobiDBLite consensus disorder prediction 116 155 - -
Tsu01g01297 804 MobiDBLite consensus disorder prediction 116 140 - -
Tsu01g01297 804 CDD B3_DNA 29 103 IPR003340 GO:0003677
Tsu01g01297 804 SUPERFAMILY DNA-binding pseudobarrel domain 14 104 IPR015300 -
Tsu01g01297 804 CDD B3_DNA 201 298 IPR003340 GO:0003677
Tsu01g01297 804 ProSiteProfiles B3 DNA-binding domain profile. 203 302 IPR003340 GO:0003677
Tsu01g01297 804 Pfam B3 DNA binding domain 203 298 IPR003340 GO:0003677
Tsu01g01297 804 Pfam B3 DNA binding domain 353 445 IPR003340 GO:0003677
Tsu01g01297 804 SUPERFAMILY DNA-binding pseudobarrel domain 198 296 IPR015300 -
Tsu01g01297 804 SMART B3_2 349 449 IPR003340 GO:0003677
Tsu01g01297 804 SMART B3_2 16 105 IPR003340 GO:0003677
Tsu01g01297 804 SMART B3_2 203 302 IPR003340 GO:0003677
Tsu01g01297 804 ProSiteProfiles B3 DNA-binding domain profile. 350 449 IPR003340 GO:0003677
Tsu01g01297 804 PANTHER B3 DOMAIN-CONTAINING 8 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01297 Tsu-Chr1 12171147 12176804 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01297 16 286 B3 DNA Binding Superfamily AT3G18990 22.981 1.15e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01297 B3 1.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01297 - - mtr:MTR_6g061070 429.869