Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01296 ATGTCATCATTGTATTGTGGCCCTCCAAAGTTCTTCAAGATTATCCAAAACCATGAACTACAAAATCATGAGCTTAGGGTGCCAAAGAAATTTGTGGAAAAACATTGGAAAGGAATCCCAAATCCAGCAGTGATTACATTCCCTAATGGTattcaacaaaaattattttgggtGAAGCATGACGGCGATATATGGTTTCAAAAGAATTGGGAGAAAATAGCTAAGTTTCTGAAATTTGGATATGTTGTTCTTTTCAAATACATGGGAGGATCATGTTTTCAACTTGAGATATTCGGACTCAATTCTTTGGAAATCGATTATTCCATTGTCATAGATCAAGTTAAAAGAGAAGCTGAATTTGAAGAAGTGAGTGATGATATTACAGAGCAAATATTCTCAAGGAGTAAATTTGTTGATGAAACTAATGTTGCTGGTACAtctcaaagaagaaaaaggggtactaAGAGAGGAGTGACTAATCCAAGTTTTGAGCTTAAACTGTCAGAAACTTATGCACATGGCTATTTATTTAGGATTCCATGTGAGTTTTCAAGAACATACATGGAAGATTTTGAGGGGATTGCATTTATAGGAAAGGTTGGTGAGGATATCACTTGGGAGATAGTTGTGAAATATGATCCGAAAGGCGATTCTCATTTGGTGAATAGTGGTTGGAAACCATTTTCCATGGAATATAACTTGCAAACCAGTGATGTTTGTAAGTTTGTTATGACTCGATTCCAACCTCTTTCTTTTACCATTACTATTACCCGAGCATGA 780 0.3372 MSSLYCGPPKFFKIIQNHELQNHELRVPKKFVEKHWKGIPNPAVITFPNGIQQKLFWVKHDGDIWFQKNWEKIAKFLKFGYVVLFKYMGGSCFQLEIFGLNSLEIDYSIVIDQVKREAEFEEVSDDITEQIFSRSKFVDETNVAGTSQRRKRGTKRGVTNPSFELKLSETYAHGYLFRIPCEFSRTYMEDFEGIAFIGKVGEDITWEIVVKYDPKGDSHLVNSGWKPFSMEYNLQTSDVCKFVMTRFQPLSFTITITRA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01296 259 PANTHER B3 DOMAIN-CONTAINING 150 258 - -
Tsu01g01296 259 PANTHER B3 DOMAIN-CONTAINING 8 136 - -
Tsu01g01296 259 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 150 258 - -
Tsu01g01296 259 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 136 - -
Tsu01g01296 259 SMART B3_2 163 258 IPR003340 GO:0003677
Tsu01g01296 259 SMART B3_2 11 101 IPR003340 GO:0003677
Tsu01g01296 259 CDD B3_DNA 9 98 IPR003340 GO:0003677
Tsu01g01296 259 SUPERFAMILY DNA-binding pseudobarrel domain 8 101 IPR015300 -
Tsu01g01296 259 CDD B3_DNA 161 258 IPR003340 GO:0003677
Tsu01g01296 259 ProSiteProfiles B3 DNA-binding domain profile. 162 259 IPR003340 GO:0003677
Tsu01g01296 259 Gene3D - 145 259 IPR015300 -
Tsu01g01296 259 SUPERFAMILY DNA-binding pseudobarrel domain 159 258 IPR015300 -
Tsu01g01296 259 Gene3D - 6 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01296 Tsu-Chr1 12168688 12169946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01296 115 258 B3 DNA Binding Superfamily AT3G18990 27.389 3.45e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01296 - - mtr:MTR_1g050845 250.366