Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01295 ATGTCATCATTGTATTCTGGCCCTCCAAAGTTCTTCAAGATTATCCAAAACCATGAACTCCAAAATGGACAGCTTAGGGTGCCAAAGAAATTTGTGGAAAAACATTGGAAAGCAATTCCAAATCCAGCAGTGATTACATTCCCTAATGGTattcaacaaaaattattttgggtGAAACATGACGGCGATATATGGTTTCAAAAGAATTGGGATAAAATAGCTAAATTTCTGAAATTTGGATATGTTGTTCTTTTCAAATACATGGGAGGGTCATGTTTTCAACTTGAGATATTTGGACTCAATGCTTTGGAAATCGATTATTCCATTTTCATAGATCAAGTCAAAAGAGAAGCTGAATTTGATGAAGTTAGTGATGATACTATCTCAAAGAGTAAATTTGTTGATGAAACTGATATTGCTGGTACTtctcaaagaagaaaaagggGTACCAAGAGAGGTGTGACTAATCCAAGTTTTGAGATTACACTAACCCACACTTCTGCACATGGCTATATATTTAGAATTCCATCTGAGTTTTCAAGAACATACATGCAAGATTTTGAAGGGAGTGCATGGATTAGAAAGGCCGGTGAGGATAGGACTTGGAAGATAGAGGTTAAATATGATCGGAAACGTAATTATTCTTCTGTGAACAGTGGTTGGAATCCATTTTCAGATGAATATAACATGCAAATCGGTGATATTTGCAAGTTTCAGATGACTCGATCCGAACCACTTTCTTTTACCGTCACTATTATCCGAGCTAGAAAGTAA 774 0.3424 MSSLYSGPPKFFKIIQNHELQNGQLRVPKKFVEKHWKAIPNPAVITFPNGIQQKLFWVKHDGDIWFQKNWDKIAKFLKFGYVVLFKYMGGSCFQLEIFGLNALEIDYSIFIDQVKREAEFDEVSDDTISKSKFVDETDIAGTSQRRKRGTKRGVTNPSFEITLTHTSAHGYIFRIPSEFSRTYMQDFEGSAWIRKAGEDRTWKIEVKYDRKRNYSSVNSGWNPFSDEYNMQIGDICKFQMTRSEPLSFTVTIIRARK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01295 257 CDD B3_DNA 9 98 IPR003340 GO:0003677
Tsu01g01295 257 CDD B3_DNA 157 254 IPR003340 GO:0003677
Tsu01g01295 257 PANTHER B3 DOMAIN-CONTAINING 147 255 - -
Tsu01g01295 257 SMART B3_2 11 101 IPR003340 GO:0003677
Tsu01g01295 257 SMART B3_2 159 256 IPR003340 GO:0003677
Tsu01g01295 257 ProSiteProfiles B3 DNA-binding domain profile. 158 256 IPR003340 GO:0003677
Tsu01g01295 257 SUPERFAMILY DNA-binding pseudobarrel domain 6 101 IPR015300 -
Tsu01g01295 257 PANTHER B3 DOMAIN-CONTAINING 7 138 - -
Tsu01g01295 257 Gene3D - 142 257 IPR015300 -
Tsu01g01295 257 Gene3D - 5 102 IPR015300 -
Tsu01g01295 257 Pfam B3 DNA binding domain 161 255 IPR003340 GO:0003677
Tsu01g01295 257 SUPERFAMILY DNA-binding pseudobarrel domain 155 255 IPR015300 -
Tsu01g01295 257 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 138 - -
Tsu01g01295 257 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 147 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01295 Tsu-Chr1 12158402 12159605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01295 115 254 B3 DNA Binding Superfamily AT3G18990 25.974 2.01e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01295 B3 2.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01295 - - mtr:MTR_1g050845 245.358