Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01294 ATGTTGGATCAAAACAACATTCCATCTGAAGATCCTTCACAAGGTGAGCAGCCCTTTGAACCTGTTCAAGTTCCCTTCATTGATCTTGtggaaaatgatgatgatgataatgatgatgatgtcgTCGAATCTTCTCCAAGATCTTTTTATCAGGTTGAAAATGCTGAAAAGTCCCCTAAAACTGATCAAGAAGTTGTTGAGCCTCAAATTGAAGAAGCTGAACCTCCAAAAGATGTTGGCTTAATTTGTCCAATATGTAAGGATTCTTTCACAGAGGAAACGGCAACAAAGTGTGGtcatatattttgcaaaatctGCATCAAGACTGCTATAAGAAGACGGGCTAAGTGTCCTATATGTAGAGAAAAGATTTCTTCAAGAGGGCTACTAAGGGTATTTCTTCCATATTCTGGTTGA 417 0.3429 MLDQNNIPSEDPSQGEQPFEPVQVPFIDLVENDDDDNDDDVVESSPRSFYQVENAEKSPKTDQEVVEPQIEEAEPPKDVGLICPICKDSFTEETATKCGHIFCKICIKTAIRRRAKCPICREKISSRGLLRVFLPYSG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01294 138 SUPERFAMILY RING/U-box 82 126 - -
Tsu01g01294 138 ProSiteProfiles Zinc finger RING-type profile. 83 121 IPR001841 -
Tsu01g01294 138 SMART ring_2 83 120 IPR001841 -
Tsu01g01294 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 135 IPR013083 -
Tsu01g01294 138 MobiDBLite consensus disorder prediction 1 65 - -
Tsu01g01294 138 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Tsu01g01294 138 PANTHER ELFLESS, ISOFORM B 45 135 - -
Tsu01g01294 138 PANTHER ELFLESS, ISOFORM B 45 135 - -
Tsu01g01294 138 Pfam Zinc finger, C3HC4 type (RING finger) 83 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01294 Tsu-Chr1 12151974 12155317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01294 25 137 C3H Transcription Factor Family AT3G07200 38.298 1.64e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01294 K22651 - ath:AT3G07200 94.3597