Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01269 ATGTCATTTCCTGAGTTTTTTAAGATAATGCAAAATCATGAAGAGGAGCTTAGGCTTCCTAAGAAATTTGTGGAGAAATATTGGAAAGGAATATCAAATCCAGTAGTCCTTAAACTTCCCAATGGTGCTCAACAAGAAATATTTTGGGTGAAGCATGATGGTCATATTTGGTTCAAGAAAAATTGGGAAAAATTTGCAAAGTTTCTAAAATTTGGATATGTTGTAGTTTTTAAATACAAAGGAGGATCATATTTTAAGGTTAAGATATTTGGTCTCAACACATTGGAAATAGACTAttccaaaataaaatgtgtGGATGAAGTTGGTGATGAAAGTGTAGAAGAAGTTGAAGTGAATGATGATAGAGATAAGAGTTTAGATGAGAGTGAAACATCTAAGCAAGCTCAAAGGATAAAAGTTAATGGCAAGAGAAAAGTTGATATGGATTTTGAGACTGCTGAGGAGAAATTTTTAAGTGCTAACAAAAGAAGTATGACTAAGAAGGCTAAAAAATGCCCAACAACTGCTAATGAGAATCCATGTTTTGAACTGAAATTGACACCATCTTACATCCAAGGCAATACATTGAAAATACCAAGTGGGTTTTCAAGAGAATACTTAAGCAACTTCAAAGGGACTGCAACCATAAGAGTTGGTGAGGACATGCCAATAGAATTGAAGCTATCATTTGATAATATTCATAGAAGATCGATTGTGACCGGTGGTTGGAAGTCATTTAGCCAAAAATATAACATGCAAGTTGGTGATGTATGCAAGTTTGAGATGACTCGATCCAAACCACTTTCGTTCACTATTACTATTACCCGATATATACCAAAGACGTTTTTTAATAGACGTAGAGAATGCCATGGAAAATTTGTGGAGCTGAAAGTGGAAGGCAAATCGTGGCTTGTAAAAGTGAAATATTATTCCAAACGCGGCAGTAGATTATGTTATGGTTGGACCAAATTTATGAAAGATTGCAAATTGGAGGCTGGAGATAGTTGTCTCTTTAAGTTgattgatgaagaaaaatttgtgTTTAAAGTTTCTTTTGCAAGGAAGAAGAATCCGTGA 1077 0.3343 MSFPEFFKIMQNHEEELRLPKKFVEKYWKGISNPVVLKLPNGAQQEIFWVKHDGHIWFKKNWEKFAKFLKFGYVVVFKYKGGSYFKVKIFGLNTLEIDYSKIKCVDEVGDESVEEVEVNDDRDKSLDESETSKQAQRIKVNGKRKVDMDFETAEEKFLSANKRSMTKKAKKCPTTANENPCFELKLTPSYIQGNTLKIPSGFSREYLSNFKGTATIRVGEDMPIELKLSFDNIHRRSIVTGGWKSFSQKYNMQVGDVCKFEMTRSKPLSFTITITRYIPKTFFNRRRECHGKFVELKVEGKSWLVKVKYYSKRGSRLCYGWTKFMKDCKLEAGDSCLFKLIDEEKFVFKVSFARKKNP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01269 358 Pfam B3 DNA binding domain 276 355 IPR003340 GO:0003677
Tsu01g01269 358 Pfam B3 DNA binding domain 184 274 IPR003340 GO:0003677
Tsu01g01269 358 CDD B3_DNA 4 90 IPR003340 GO:0003677
Tsu01g01269 358 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 276 355 - -
Tsu01g01269 358 CDD B3_DNA 180 276 IPR003340 GO:0003677
Tsu01g01269 358 SUPERFAMILY DNA-binding pseudobarrel domain 267 351 IPR015300 -
Tsu01g01269 358 SMART B3_2 270 354 IPR003340 GO:0003677
Tsu01g01269 358 SMART B3_2 6 93 IPR003340 GO:0003677
Tsu01g01269 358 SMART B3_2 182 269 IPR003340 GO:0003677
Tsu01g01269 358 PANTHER B3 DOMAIN-CONTAINING 276 355 - -
Tsu01g01269 358 Gene3D - 277 357 IPR015300 -
Tsu01g01269 358 Gene3D - 158 276 IPR015300 -
Tsu01g01269 358 Gene3D - 1 94 IPR015300 -
Tsu01g01269 358 CDD B3_DNA 277 354 IPR003340 GO:0003677
Tsu01g01269 358 PANTHER B3 DOMAIN-CONTAINING 2 276 - -
Tsu01g01269 358 SUPERFAMILY DNA-binding pseudobarrel domain 3 93 IPR015300 -
Tsu01g01269 358 MobiDBLite consensus disorder prediction 115 139 - -
Tsu01g01269 358 MobiDBLite consensus disorder prediction 118 134 - -
Tsu01g01269 358 ProSiteProfiles B3 DNA-binding domain profile. 261 356 IPR003340 GO:0003677
Tsu01g01269 358 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 276 - -
Tsu01g01269 358 SUPERFAMILY DNA-binding pseudobarrel domain 177 274 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01269 Tsu-Chr1 11853260 11858063 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01269 1 276 B3 DNA Binding Superfamily AT3G18990 26.176 6.47e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01269 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01269 - - mtr:MTR_1g035570 348.591