Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01267 ATGTCATTTCAATATCGCCCTGATTTTAGAATAATATTGCAAGATTCTAAGAAACTTATGCTTCCCAAGGCATATGTGGAGAAATATTGGGAAGGAATATCAAACCCAATATTCCTTATATTCCCAAATAATGTTCAACAAGAAATATTTTGGGTGGAACGTGATGGTGAAATTTGGtttcaaaaaaattgggaaAATTTTGCAAAGTTTTTGAAATATGGatatgttttaacttttaaatacaTAGGTGGATCATATTTCAAGGTTAAGATATTTGGTGTCAATGCTTTAGAGATAAACTATTCCAATATTAGAAAATGTGTAGATGAAGAAGTTGTCGAAGACGAAGAAATTGTTGAAGTGACTGACGAGAGTGATGGTGAGAGTGATAATGAGAGTGATGATGAGTATGAAATAGCCATGAAACCTCGAATTAGGATGAGAAATGACAAGAGAAAATTTAATATGGATTTAGATACTACCCAACAAATATTTTCAGGTATTAACAATGTAGCCATGGTAAAGAAGGCTAAAAAATACCCAACAATTGTAGCTGGTGATGAGAGAGGCAACAATGAGTATCCCTTTTTTGAAGTTAAATTGACACCATCTTATGTCAATGGCACTTTTTTGGGGATACCAACTAAGTTTTCAAGAGAATGCttgaataaatttgaagggactGCAACCATAAGGGTTGGTGACGATGAAAAGACTATGGAAGTGAATGTGAGGTTTGAATATGGCAATAAAAGATCTATTATAACCACAGGTTGGAAGTTacttagtaaaaaatataacttcCAAGTTGACGATGTTTGTAAGTTTGTGATGACTCGACAAGAGCCACTTTCATTTACTATTATTGTTACTCCGTCCGAAAAAGGACCAAGCCCAAAGAAGTTGCTagGTTATAAAGAAGGGATCACTTGTGATAATAATATTGTCCAAAGGAAAGAGATCGGAGTAACTTCTACGAGTCGTCATAAAaGGCTTCCCAAGAATTTTGTGGACAAATATTGGAAAGGAATATCAAATCCAGTAGTCCTTAGTCTCCCAAATGGTGTTCAACAGAAAATATTTTGGGTAAAGTGTGGTGgTAAAGAAGTTGTTGAAGTGAGTGATGATAGTGATAAGAATTTAGAAGAGAGTGAAATATTCAAGAACAAGAAATGGCAAGAGATAAATTACAATGGTGTTGAAACTACAAAGGAAGAACCTAAAGAATTTGTTGATGTGAGTGATGAAAGTGACATACCCATACAAATTCAAAGGACAAACAATGGcaagagaaaaatgaatgtaGATTTTGATGCTACCCAGCAAAAAATCTTATGTACTGACAAAGGAGACATCGTTAAGAAGGCTAAAATGAGCCCATTAACCGAAACTGTTAATGTGAGAGCCAACAATGAGAATCCATGGTTTCAACTTAAATTGTCACCATGTTATGCCCATGGTACATTCATGAAAATACCAAGTGAGTTTTCAAGAGAATACTTGAACAACTTTAAAGGGATTGCAACCATAAGTGTTGGTGGGAATATACCTATGAAAGTGAAGATGAAGTTTGATAATATTTATAGAAGATCTATTATAACTACTGGTTGGAACTTATTTAACCAAAGATATAACTTAAAAGCTAATGATATATGTTACTTTGAGATGATTCAACTCCAACCACCTTCATTCTCTGTTACTATTTTTCGAGCAATAGAGAACTCAAGCCCAAAGAAGTTACAAgATTCAGAAAATCAAAATGTGTTGAAACCTAAGACATTCAAGCTTCTTGTGAATGCCACATATCCGGTAGGAATTGCATAA 1824 0.3257 MSFQYRPDFRIILQDSKKLMLPKAYVEKYWEGISNPIFLIFPNNVQQEIFWVERDGEIWFQKNWENFAKFLKYGYVLTFKYIGGSYFKVKIFGVNALEINYSNIRKCVDEEVVEDEEIVEVTDESDGESDNESDDEYEIAMKPRIRMRNDKRKFNMDLDTTQQIFSGINNVAMVKKAKKYPTIVAGDERGNNEYPFFEVKLTPSYVNGTFLGIPTKFSRECLNKFEGTATIRVGDDEKTMEVNVRFEYGNKRSIITTGWKLLSKKYNFQVDDVCKFVMTRQEPLSFTIIVTPSEKGPSPKKLLGYKEGITCDNNIVQRKEIGVTSTSRHKRLPKNFVDKYWKGISNPVVLSLPNGVQQKIFWVKCGGKEVVEVSDDSDKNLEESEIFKNKKWQEINYNGVETTKEEPKEFVDVSDESDIPIQIQRTNNGKRKMNVDFDATQQKILCTDKGDIVKKAKMSPLTETVNVRANNENPWFQLKLSPCYAHGTFMKIPSEFSREYLNNFKGIATISVGGNIPMKVKMKFDNIYRRSIITTGWNLFNQRYNLKANDICYFEMIQLQPPSFSVTIFRAIENSSPKKLQDSENQNVLKPKTFKLLVNATYPVGIA 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01267 607 SUPERFAMILY DNA-binding pseudobarrel domain 470 570 IPR015300 -
Tsu01g01267 607 CDD B3_DNA 195 290 IPR003340 GO:0003677
Tsu01g01267 607 SUPERFAMILY DNA-binding pseudobarrel domain 192 282 IPR015300 -
Tsu01g01267 607 CDD B3_DNA 476 570 IPR003340 GO:0003677
Tsu01g01267 607 PANTHER B3 DOMAIN-CONTAINING 327 368 - -
Tsu01g01267 607 PANTHER B3 DOMAIN-CONTAINING 375 571 - -
Tsu01g01267 607 ProSiteProfiles B3 DNA-binding domain profile. 196 294 IPR003340 GO:0003677
Tsu01g01267 607 CDD B3_DNA 7 92 IPR003340 GO:0003677
Tsu01g01267 607 PANTHER B3 DOMAIN-CONTAINING 9 289 - -
Tsu01g01267 607 SUPERFAMILY DNA-binding pseudobarrel domain 11 95 IPR015300 -
Tsu01g01267 607 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 327 368 - -
Tsu01g01267 607 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 375 571 - -
Tsu01g01267 607 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 289 - -
Tsu01g01267 607 Gene3D - 177 295 IPR015300 -
Tsu01g01267 607 Gene3D - 454 574 IPR015300 -
Tsu01g01267 607 Gene3D - 4 96 IPR015300 -
Tsu01g01267 607 Pfam B3 DNA binding domain 197 284 IPR003340 GO:0003677
Tsu01g01267 607 Pfam B3 DNA binding domain 485 571 IPR003340 GO:0003677
Tsu01g01267 607 SMART B3_2 197 292 IPR003340 GO:0003677
Tsu01g01267 607 SMART B3_2 9 95 IPR003340 GO:0003677
Tsu01g01267 607 SMART B3_2 476 572 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01267 Tsu-Chr1 11839749 11848536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01267 473 570 B3 DNA Binding Superfamily AT3G18990 30.000 1.53e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01267 B3 1.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01267 - - mtr:MTR_1g035640 340.117