Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01266 ATGTCTTTGTATTGTGGCCCTCCAAAGTTCTTCAAGATTATCCAAAACCATGAACTCCAAAATCATGAGCTTAGGGTACCAAAGAAATTTGTGGAAAAACATTGGAAAGGAATCCCAAATCCAGTAGTGATTAAACTCCCTAATGGtgttgacaaaaaattattttgggtGAAACATGACGGCGATATATGGTTTCAAAAGAATTGGGATAAAATAGCTAAGTATCTGAAATTTGGATATGTTGTTGTATTCAAATACATGGGAGGATCATGTTTTCAACTTGAGATATTTGGACTCAATGCTTTGGAAATCGATTATTCCATTTTCATAGATCAAGTAAAAAGACAAGTTgagtttgatgaagatgaaagtgatgaagatgagagtgatgatgaagagagtgatgaagatgaatatGAAATAATGAAGCAAAAAAGGACAACCAAAAGGAAGAgaaaaattgatgaagatgAGAgtAGTGGCAGTGGAGGCAGGATCAAAAAGGTCAGAAAATGTTCATCAAGGGATAATGATGCCAATCCCTTTTTTGAAATTGAACTATCAGATTATTATACCCATGGCAATTTCTTGATGATCCCAAGTAAGTTCTCTAGAGAACACTTGAACAAATTTGTAGGCACTGCAACCCTACAAGTTGGTAAGGAAATGCCAATCAAAGTGAACATGAAATTTGATGCCAAGAATAGAAGATCCACCATAGGTTCTGGTTGGAAGTTATTTAGGAAAGAATATAACTTGCAAGTTGAGGATTCTTGTAAGTTTGTCATGATTCAACGCCGACCATCACTTGTTTTCAATGTTATTATTACTCGAGTCATGGAGGGAGCAAGCGGTAAGAAGTTGCGTGGTTGGAGGGAAGTTGGAAACAATTCTTGGATGTTAGGAAAATAG 912 0.3213 MSLYCGPPKFFKIIQNHELQNHELRVPKKFVEKHWKGIPNPVVIKLPNGVDKKLFWVKHDGDIWFQKNWDKIAKYLKFGYVVVFKYMGGSCFQLEIFGLNALEIDYSIFIDQVKRQVEFDEDESDEDESDDEESDEDEYEIMKQKRTTKRKRKIDEDESSGSGGRIKKVRKCSSRDNDANPFFEIELSDYYTHGNFLMIPSKFSREHLNKFVGTATLQVGKEMPIKVNMKFDAKNRRSTIGSGWKLFRKEYNLQVEDSCKFVMIQRRPSLVFNVIITRVMEGASGKKLRGWREVGNNSWMLGK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01266 303 SUPERFAMILY DNA-binding pseudobarrel domain 177 278 IPR015300 -
Tsu01g01266 303 MobiDBLite consensus disorder prediction 139 174 - -
Tsu01g01266 303 Gene3D - 6 101 IPR015300 -
Tsu01g01266 303 MobiDBLite consensus disorder prediction 119 174 - -
Tsu01g01266 303 ProSiteProfiles B3 DNA-binding domain profile. 182 280 IPR003340 GO:0003677
Tsu01g01266 303 CDD B3_DNA 181 275 IPR003340 GO:0003677
Tsu01g01266 303 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Tsu01g01266 303 PANTHER B3 DOMAIN-CONTAINING 7 279 - -
Tsu01g01266 303 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 279 - -
Tsu01g01266 303 SMART B3_2 183 280 IPR003340 GO:0003677
Tsu01g01266 303 SMART B3_2 10 100 IPR003340 GO:0003677
Tsu01g01266 303 Pfam B3 DNA binding domain 182 273 IPR003340 GO:0003677
Tsu01g01266 303 Gene3D - 164 282 IPR015300 -
Tsu01g01266 303 CDD B3_DNA 8 97 IPR003340 GO:0003677
Tsu01g01266 303 MobiDBLite consensus disorder prediction 120 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01266 Tsu-Chr1 11825442 11826729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01266 8 279 B3 DNA Binding Superfamily AT3G18990 24.779 2.98e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01266 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01266 - - mtr:MTR_1g035640 258.07