Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01265 ATGTCATTATACATCCCTCGAAAGTTCTTCAGGACTATGCAAAATGAAGATCTTCAAAATGGAGAAATTAGGGTTCCAAAAGAATTTGTGAAGTTACATTGGAAAAGTGTATCAAATCCTGTAGTGTTTATTCTCCCAAATGGTGCTACACAAGAAATATATTGGAAGAAACGTAATGGTGATATTTGGTTTCAAAAGAATTGGGAAAAATTTGCTATGTTTCTAAAATTTAGATATATAGTAAATTTTGAATACATTGGAGGATCATATTTTAAGATTGAGATATTTGGGTTTAATTCATTGGAAATTGACTATTCCAACATAAAGTTCATAGATGAAGTTGTGAATGATGACATTAATGGTGCTCAACTTAGAAAAGAAGCTATTGAAGTGAGTGATGATGATAGTGATAAGAGTTCAGATGAAAGTGAATTACAATTACCTAGACAAACTCAAAGGACCAAAAATGgcaagagaaaaagaaatatggattctaatgcaaaacagcaaaacaTATCATGTAGTAATAGAGTAGGCATGAATAAGAAGGCTAAAAAATGCAATGCCAATAATGAAAGAGGTAGAAAGAGAGGAGGCATGATTAAGGAGAGAACAAGAGATTATTGTTCTCTTGGTGAGAATCCTAGTTTTGAACTTCAATTGTCACCTTCTTATGCCCATGGTCGTTGTTTGAGGATACCAAATGATTTTTCGAGAGAATACTTGAAGGGGTTCAAAGGGACTGTGAAGATTAGATTTGGTTATAAAGAAAGAAGCTCTTCTTGTGATAATAACATTGTGGTGAGAAAATGGAACACTAAAGGAACTTCTAGCAACCGTCGTGTTATCTCGGATCCAAAAGGCCATAATGTGATGAAGCATAGCACATTCGAGCTTATTGTCACTAATACCAATTACCCGTATGTACCAAATGATTTTTTGCGTAGACACAAAAAATGTTGTGGAAAATTCGTGAAGTTGAAAGTGGATGGAAAATCATGGTTTGTAAAAGTGAAGTATTATCCTCGAGGCAGTAGATTATCTCTTGGTTGGACAAAGTTTAAGAAAGAATGCAAATTGAAGGTTGGAGACATTTGTCACTTTAAGTTGATTGATGAGGAAAAGTTTGTGTTTGAAGTTTCATTTGTAAGAAAGTAG 1158 0.3238 MSLYIPRKFFRTMQNEDLQNGEIRVPKEFVKLHWKSVSNPVVFILPNGATQEIYWKKRNGDIWFQKNWEKFAMFLKFRYIVNFEYIGGSYFKIEIFGFNSLEIDYSNIKFIDEVVNDDINGAQLRKEAIEVSDDDSDKSSDESELQLPRQTQRTKNGKRKRNMDSNAKQQNISCSNRVGMNKKAKKCNANNERGRKRGGMIKERTRDYCSLGENPSFELQLSPSYAHGRCLRIPNDFSREYLKGFKGTVKIRFGYKERSSSCDNNIVVRKWNTKGTSSNRRVISDPKGHNVMKHSTFELIVTNTNYPYVPNDFLRRHKKCCGKFVKLKVDGKSWFVKVKYYPRGSRLSLGWTKFKKECKLKVGDICHFKLIDEEKFVFEVSFVRK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01265 385 Pfam B3 DNA binding domain 302 384 IPR003340 GO:0003677
Tsu01g01265 385 SUPERFAMILY DNA-binding pseudobarrel domain 295 378 IPR015300 -
Tsu01g01265 385 MobiDBLite consensus disorder prediction 130 175 - -
Tsu01g01265 385 CDD B3_DNA 297 384 IPR003340 GO:0003677
Tsu01g01265 385 Gene3D - 5 99 IPR015300 -
Tsu01g01265 385 PANTHER B3 DOMAIN-CONTAINING 7 268 - -
Tsu01g01265 385 SUPERFAMILY DNA-binding pseudobarrel domain 7 99 IPR015300 -
Tsu01g01265 385 CDD B3_DNA 7 96 IPR003340 GO:0003677
Tsu01g01265 385 ProSiteProfiles B3 DNA-binding domain profile. 292 385 IPR003340 GO:0003677
Tsu01g01265 385 Gene3D - 200 286 IPR015300 -
Tsu01g01265 385 Gene3D - 287 385 IPR015300 -
Tsu01g01265 385 SMART B3_2 9 99 IPR003340 GO:0003677
Tsu01g01265 385 SMART B3_2 217 384 IPR003340 GO:0003677
Tsu01g01265 385 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 268 - -
Tsu01g01265 385 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 302 384 - -
Tsu01g01265 385 PANTHER B3 DOMAIN-CONTAINING 302 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01265 Tsu-Chr1 11783723 11786623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01265 308 384 B3 DNA Binding Superfamily AT3G18990 31.169 2.13e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01265 B3 1.7e-11 CL0405