Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01264 ATGTCAACTTATTGGCCTAAAGAGTTCTTCAAGATAATGCAAAATCATGAACTGCAAAACGGAGAACTTAGGCTTCCGAAGAAATTTGTGAAGAAACATTGGGAAGGAATATCAAATCCAGTAGTACTTAAACTTCCAAATGGTGATCAACATAAAATATCTTGGGTGAAGCGCGACGGTGATATTTGGCTTCAAAAGAATTGGGAAAATATCGCAAAGTTTCTTAAATTTGGATATGCTGTAGTTTTTAAATACATAGAAAAAATTCGAAGATCATATTTTAAGGTTAAGATATTTGGTCTAAATACATTGGAAATAGATTATTCCACTATACCAATGTTCATAGATGAAAGTTGTGAAGCTCaagaaattgttgatgatgatgatgatagtgatACAAGTTTAGATGATGAAATGAGTGGTACTAATAGtttagatgatgatgatagtgatGAAATGAGTGAGAGTGATGATGTTGGTACTTCTCAAAGGAGGAAAAATGGCAAGAGAAAAATGAATGGTAGTAAGAGAGGAAACATGATTAAGAAGGCTAAGAAATGTTCAACAAGTGGAGCTGTTAATGTGAATCCAAGTTTTGAAGTTAAATTGTCAAAATCTTATGCCCTGCCCAATGGCGATACATTGAGGATACCAAGtgaattttctcaaaaaaactTGAAAGGGTATAATGGGACTGCAAGAATTAGAGTTGATGAGGACATGGAAATGGAAGTGAGGGTGATATTTCAAGATATCAATTATAATAGAACATGCTTTATATCCAAAGGTTGGAAGTCATTTATCAGAAAATATAACTTACAAGTTGGTGATATATGTAAATTTGAGATGATTCAAGACCAACCACTTTCATTCATTGTCACTATTGTTCGAGCCAGATGCATGGAAGGAACTTCTAGGAGCTGCAATGTTCATTCAAATTTAGAAGGTCCTAATGTGACGCAACCACACATTATTGAGATTTGTGTGAGCTCTAACTACCCGTATATTGAAAGTGAGTTTTTGGATGGACATAGAGAATTGCATAACAAAGATGTGGAGTTGAAAATGGGGATAAAATCGTGGTTTGTAACGGTGAAATTTTATGGAAAAACTATTAGGTTCTATAAAGGTTGGAGAAAATTTAAGAAAGGTTGCAAGTTGAAGAATGGAGATATTATTTTCCTTGAGTTGATTGATGAAGAACAATTTGTGTTTGAAGTTTCATTTGAATGA 1233 0.3195 MSTYWPKEFFKIMQNHELQNGELRLPKKFVKKHWEGISNPVVLKLPNGDQHKISWVKRDGDIWLQKNWENIAKFLKFGYAVVFKYIEKIRRSYFKVKIFGLNTLEIDYSTIPMFIDESCEAQEIVDDDDDSDTSLDDEMSGTNSLDDDDSDEMSESDDVGTSQRRKNGKRKMNGSKRGNMIKKAKKCSTSGAVNVNPSFEVKLSKSYALPNGDTLRIPSEFSQKNLKGYNGTARIRVDEDMEMEVRVIFQDINYNRTCFISKGWKSFIRKYNLQVGDICKFEMIQDQPLSFIVTIVRARCMEGTSRSCNVHSNLEGPNVTQPHIIEICVSSNYPYIESEFLDGHRELHNKDVELKMGIKSWFVTVKFYGKTIRFYKGWRKFKKGCKLKNGDIIFLELIDEEQFVFEVSFE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01264 410 MobiDBLite consensus disorder prediction 166 183 - -
Tsu01g01264 410 ProSiteProfiles B3 DNA-binding domain profile. 359 410 IPR003340 GO:0003677
Tsu01g01264 410 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 332 409 - -
Tsu01g01264 410 SUPERFAMILY DNA-binding pseudobarrel domain 196 298 IPR015300 -
Tsu01g01264 410 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 298 - -
Tsu01g01264 410 PANTHER B3 DOMAIN-CONTAINING 332 409 - -
Tsu01g01264 410 MobiDBLite consensus disorder prediction 126 156 - -
Tsu01g01264 410 ProSiteProfiles B3 DNA-binding domain profile. 200 299 IPR003340 GO:0003677
Tsu01g01264 410 MobiDBLite consensus disorder prediction 126 183 - -
Tsu01g01264 410 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Tsu01g01264 410 Pfam B3 DNA binding domain 199 298 IPR003340 GO:0003677
Tsu01g01264 410 Pfam B3 DNA binding domain 9 99 IPR003340 GO:0003677
Tsu01g01264 410 Gene3D - 310 410 IPR015300 -
Tsu01g01264 410 Gene3D - 174 299 IPR015300 -
Tsu01g01264 410 SMART B3_2 325 408 IPR003340 GO:0003677
Tsu01g01264 410 SMART B3_2 9 102 IPR003340 GO:0003677
Tsu01g01264 410 SMART B3_2 199 299 IPR003340 GO:0003677
Tsu01g01264 410 CDD B3_DNA 7 99 IPR003340 GO:0003677
Tsu01g01264 410 CDD B3_DNA 197 297 IPR003340 GO:0003677
Tsu01g01264 410 SUPERFAMILY DNA-binding pseudobarrel domain 330 405 IPR015300 -
Tsu01g01264 410 PANTHER B3 DOMAIN-CONTAINING 7 298 - -
Tsu01g01264 410 Gene3D - 4 103 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01264 Tsu-Chr1 11776177 11778373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01264 6 297 B3 DNA Binding Superfamily AT3G18990 25.581 9.31e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01264 B3 3.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01264 - - mtr:MTR_1g035620 417.157