Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01263 ATGGGAGCAATAGTGTCCATTTTTCCAAGATTATTCTTCCAGGATTATTCTTCAAACTACCCTTCAACAAGAACTATGTCATCTCAAAGTGTCCATTTTTCCACGATTATTCTTCAAACTACCCTTCAACAAGAAAAAATGAGAGTACCTATAAGTTTTGTGAGGAGGTATTGGAAAGGAATATCAAATCCAGTTACTCTAAGGCTACCAAATTCGACCGAAAAGAAAGTTTATTGGGAAAAAACTAGTGACTACGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAAATTATTTGTCTTTGCGTCATTTACACTTAATAGTTTTTCGATACGAAGAAAACTCTATCTTTAAAGTGATTGTATTAAGTGGTAGCGGTTTAGAAATAAAATACCCTTTAAGAGAAACTACCGAAAAATATAAAGAGGTTGAAGAGAGTAATTGTTCTTTGAAAATTATTGAGGATCCTTCAACATCGCGGGGTAAAAGGAAAAAATCTCCATTGCCGTCTTCTAGAGTTTGTAAGAAGATGAAAATCAATCCAAAAGAATCTAAGCATGAGAAGAGAATCGTCCAAACACATGGTTGGTTTTCAGGAAGTAGCAATGACAATCTTAAAAAGAGAAGCAATGATTTGTATGAAAAAGTGATGAAAAATTTCGAGTCGGATAAGGACTTCTTCGCATGTATTCTCCAAAAGACATACATTGAGAGAGATGTCTTGGCCATACCAATTGAATTTGCAAAGACACATCTACAAATGATGGAAGGAAGAAATGTTACACTTTTTGTTGACAAAGATAGAACATGGAATGTTAATTTGAAGCTCACTTCAAATAAACAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGTGATCACTATAATTTGAAATTTGGTGATGTTTGTGTTTTTATACTAAACAAATGCAAAGGAACAGTTTCATTCCAAgttgttattttctctctagaAAAGGACATGAACACTCCCTATTTTGAAGGTGGACCCTATTTTAAGGTTAAGATATTTGGTGTTAATGCTTTAGAAATCAACTATTCCATTATCAAATCCGTAGAAGATAGAGAAGAATTTATTGATGTGAGTGAAGATGAGTGTGATgagagtgatgatgatgatgatgttgctgagagtgaagaagaagagagtgatgaagatgaagatgagaTTAGTGGCAGTGGAGGCAGGATAAAAAAGGTCAAAAAATGTTCATCAAGAGACAATGATGCCAATCCCTTTTTTGAAgttaaattatcaaattattatgCTCATGGCAGTTTCTTGATGATCCCAAGTAAGTTCTCTAGAGAACACTTGAACAAATTTGTAGGCACTGCAACCCTACAAGTTGGTAAGGAAATGCCAATCAAAGTGAACATGAAATTTGATGCCAAGAATAGAAGATCCACCATAGGTTCTGGTTGGAAGTTATTTAGGAAAGAATATAACTTGCAAATTGACGATTCTTGTAAGTTTGTCATGATTCAACGCCGACCATCACTTATATTCAATGTTATTATTAATCGAGTCACGAAGGGGCCAAATCGTAAAGATGAATTTGAATTCCCTAAAGTCATATTTTCCTACACATCCTACATTTATGTAAAATTTAAGagtattattCTGGTAATACCAAGTGAGTTCTTGAAGAGACACAATTTATCTAATGGAAATTCAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAGTCAAGATCTTGATTATGGGGGGTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGAAGATTGGAGACACTTGTTTATTTGAGATGATTGATTTGAAAAATCTTGTGTTCAAGATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAAGCTTCCAAATGAGTCTGTGTGTAAAATGTTTTGGGTGCAATTTGGTGATGATATTTGGCTTCAGGATTGGAAAAGGTTTGCACGGTCGCTTCGATGCGGAGatcttttagtttttcaataCAAAGGAGGATCTGATTTTCATGTCATTATATTTGATGATAGTAAACTAGAAATTGACTATTCAAGTATGATTTGCAACGATGCACAAGAAGCTAAAGAGAGTGATGACAATGGCTATGTTGAGATTACAAATGAGGGTCACAATACCAAACAATCcctcaagaaaaagaaaatcaactcAAATAATAGTGCTACTACTGTTGCTACAACTCAAGTGGCAAACAATGTTAAGAGAAAAATTAACATGAAGCCAAGGCAACAAAAAGTCTCAGGCAAGTTAAATATAGCTATTCATcgtTTTGCAGAGGCTAATGGAAACAGAGGAGGTAGCAGTAAGAAAGCTAAGAAATGCTCAAAAACTGTAGAAGCAAATAAGATAAGCTGCACTGATTTTCATCCCGATGAGAATCCCAATTTCACTCTCAAATTAGCGCGATCTTGTGTGGAAGGTGATAAATTAAGATGGCTTAATTAG 2526 0.3266 MGAIVSIFPRLFFQDYSSNYPSTRTMSSQSVHFSTIILQTTLQQEKMRVPISFVRRYWKGISNPVTLRLPNSTEKKVYWEKTSDYDVWFCNGWKEFANYLSLRHLHLIVFRYEENSIFKVIVLSGSGLEIKYPLRETTEKYKEVEESNCSLKIIEDPSTSRGKRKKSPLPSSRVCKKMKINPKESKHEKRIVQTHGWFSGSSNDNLKKRSNDLYEKVMKNFESDKDFFACILQKTYIERDVLAIPIEFAKTHLQMMEGRNVTLFVDKDRTWNVNLKLTSNKQFTLSGGWSKFRDHYNLKFGDVCVFILNKCKGTVSFQVVIFSLEKDMNTPYFEGGPYFKVKIFGVNALEINYSIIKSVEDREEFIDVSEDECDESDDDDDVAESEEEESDEDEDEISGSGGRIKKVKKCSSRDNDANPFFEVKLSNYYAHGSFLMIPSKFSREHLNKFVGTATLQVGKEMPIKVNMKFDAKNRRSTIGSGWKLFRKEYNLQIDDSCKFVMIQRRPSLIFNVIINRVTKGPNRKDEFEFPKVIFSYTSYIYVKFKSIILVIPSEFLKRHNLSNGNSVELKVGEGTWFVEVSYSQDLDYGGFTKGWKEFVRECKVKIGDTCLFEMIDLKNLVFKMVPRNFVERYWKDVSNPISLKLPNESVCKMFWVQFGDDIWLQDWKRFARSLRCGDLLVFQYKGGSDFHVIIFDDSKLEIDYSSMICNDAQEAKESDDNGYVEITNEGHNTKQSLKKKKINSNNSATTVATTQVANNVKRKINMKPRQQKVSGKLNIAIHRFAEANGNRGGSSKKAKKCSKTVEANKISCTDFHPDENPNFTLKLARSCVEGDKLRWLN 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01263 841 CDD B3_DNA 419 513 IPR003340 GO:0003677
Tsu01g01263 841 SUPERFAMILY DNA-binding pseudobarrel domain 26 124 IPR015300 -
Tsu01g01263 841 CDD B3_DNA 549 624 IPR003340 GO:0003677
Tsu01g01263 841 ProSiteProfiles B3 DNA-binding domain profile. 32 126 IPR003340 GO:0003677
Tsu01g01263 841 PANTHER B3 DOMAIN-CONTAINING 540 625 - -
Tsu01g01263 841 SUPERFAMILY DNA-binding pseudobarrel domain 618 705 IPR015300 -
Tsu01g01263 841 Gene3D - 402 519 IPR015300 -
Tsu01g01263 841 Gene3D - 206 326 IPR015300 -
Tsu01g01263 841 Gene3D - 523 621 IPR015300 -
Tsu01g01263 841 ProSiteProfiles B3 DNA-binding domain profile. 420 518 IPR003340 GO:0003677
Tsu01g01263 841 SUPERFAMILY DNA-binding pseudobarrel domain 546 621 IPR015300 -
Tsu01g01263 841 ProSiteProfiles B3 DNA-binding domain profile. 534 628 IPR003340 GO:0003677
Tsu01g01263 841 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 540 625 - -
Tsu01g01263 841 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 333 517 - -
Tsu01g01263 841 SUPERFAMILY DNA-binding pseudobarrel domain 415 516 IPR015300 -
Tsu01g01263 841 MobiDBLite consensus disorder prediction 369 402 - -
Tsu01g01263 841 PANTHER B3 DOMAIN-CONTAINING 333 517 - -
Tsu01g01263 841 PANTHER B3 DOMAIN-CONTAINING 624 833 - -
Tsu01g01263 841 PANTHER B3 DOMAIN-CONTAINING 25 323 - -
Tsu01g01263 841 SUPERFAMILY DNA-binding pseudobarrel domain 222 323 IPR015300 -
Tsu01g01263 841 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 624 833 - -
Tsu01g01263 841 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 25 323 - -
Tsu01g01263 841 Pfam B3 DNA binding domain 227 317 IPR003340 GO:0003677
Tsu01g01263 841 Pfam B3 DNA binding domain 545 625 IPR003340 GO:0003677
Tsu01g01263 841 Pfam B3 DNA binding domain 420 506 IPR003340 GO:0003677
Tsu01g01263 841 SMART B3_2 420 518 IPR003340 GO:0003677
Tsu01g01263 841 SMART B3_2 33 126 IPR003340 GO:0003677
Tsu01g01263 841 SMART B3_2 541 628 IPR003340 GO:0003677
Tsu01g01263 841 SMART B3_2 227 325 IPR003340 GO:0003677
Tsu01g01263 841 ProSiteProfiles B3 DNA-binding domain profile. 227 325 IPR003340 GO:0003677
Tsu01g01263 841 MobiDBLite consensus disorder prediction 369 396 - -
Tsu01g01263 841 Gene3D - 622 699 IPR015300 -
Tsu01g01263 841 Gene3D - 25 126 IPR015300 -
Tsu01g01263 841 CDD B3_DNA 32 124 IPR003340 GO:0003677
Tsu01g01263 841 CDD B3_DNA 231 323 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01263 Tsu-Chr1 11711470 11774472 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01263 625 712 B3 DNA Binding Superfamily AT3G18990 36.264 3.61e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01263 B3 2.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01263 - - mtr:MTR_4g119990 422.165