Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01262 ATGATTCCTAGGagttttgtgaagaaatatggGAAAGAATTATCAAACCCAATAACCCTCATTCTACCAAATGGTGataaatggaaaataaattgGATAAAACGTGATCATGATGTGTGGCTTCAAAATGGTTGGGAAAAATTTGCACAACACTATTCTATGAGCTTTGGCCATTTTCTAGTTTTTAGATTTGAAAAAGAGTCACAATTTCAAGTTATGATATTTGATAAGAGTGCTTTGGAAATAAACTATTTAAGTAAAAGATTAAGCCCtagagatgatgatgatgatcaaaGGAACAACCAACATCATAATGAAGATGCTGAAAAGAAAGATAATGATACTAATTATAttgaaattgatgatgatgatgatgatgattataatGATATGCTAAGAACTTCATCACCTCAACCTCAcaacaaacaaatgaaaatcaATGATGGAAGTAATAAAGCAAGTTTCTTCAAAGCCAAGAATTGTTCAGCAAATGAAGCTATGACAAAGAAAGAAGCATTACTAGAAGACACTACAAGGAGAGCCATGGAATTACAATTGGATAATCCCTCTTTCATTCGTCCATTGCATCAATCCTACCTCCAATATTTGTTTATACCAACATGGTTTTCTCAAGAATATTTGAATGTGAAGAAAGAGATTGCAACCATGTCCATAAAGATTGGTGAAGAGGATAAGACATGGAAATTGATGTTTAAGTTCAATACCGACTCTAATAGGACCAAGATATATGGTGGATGGGCCTCAATTGTTGAGGAATATGATTTAAAAGTTGTTGAAGTTGAGATTGTGAAAAGAATTAGGCACAAGAAGATGCTTCATTCATCATGGAGTGATGCACTTGAACTTTACCATGTTCAAATTATGGATCCATTTGAAGTTATCTCAATGGAACCACTTGAAGTTGATAGTTCGAATTCTCAAGTTTTCTTCACTCGTTACCATGACTACTGCATAGGTGGAAAGGGTACAAGATCCAAGCAAAACTCACAACAGAATAGGTAA 1023 0.3079 MIPRSFVKKYGKELSNPITLILPNGDKWKINWIKRDHDVWLQNGWEKFAQHYSMSFGHFLVFRFEKESQFQVMIFDKSALEINYLSKRLSPRDDDDDQRNNQHHNEDAEKKDNDTNYIEIDDDDDDDYNDMLRTSSPQPHNKQMKINDGSNKASFFKAKNCSANEAMTKKEALLEDTTRRAMELQLDNPSFIRPLHQSYLQYLFIPTWFSQEYLNVKKEIATMSIKIGEEDKTWKLMFKFNTDSNRTKIYGGWASIVEEYDLKVVEVEIVKRIRHKKMLHSSWSDALELYHVQIMDPFEVISMEPLEVDSSNSQVFFTRYHDYCIGGKGTRSKQNSQQNR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01262 340 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Tsu01g01262 340 CDD B3_DNA 189 280 IPR003340 GO:0003677
Tsu01g01262 340 MobiDBLite consensus disorder prediction 89 125 - -
Tsu01g01262 340 SUPERFAMILY DNA-binding pseudobarrel domain 187 266 IPR015300 -
Tsu01g01262 340 Coils Coil 167 187 - -
Tsu01g01262 340 Gene3D - 1 79 IPR015300 -
Tsu01g01262 340 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 278 - -
Tsu01g01262 340 Pfam B3 DNA binding domain 1 77 IPR003340 GO:0003677
Tsu01g01262 340 CDD B3_DNA 1 76 IPR003340 GO:0003677
Tsu01g01262 340 PANTHER B3 DOMAIN-CONTAINING 1 278 - -
Tsu01g01262 340 MobiDBLite consensus disorder prediction 89 117 - -
Tsu01g01262 340 Gene3D - 166 282 IPR015300 -
Tsu01g01262 340 SUPERFAMILY DNA-binding pseudobarrel domain 1 78 IPR015300 -
Tsu01g01262 340 SMART B3_2 1 78 IPR003340 GO:0003677
Tsu01g01262 340 SMART B3_2 191 287 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01262 Tsu-Chr1 11706373 11708903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01262 2 279 B3 DNA Binding Superfamily AT3G18990 25.552 6.21e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01262 B3 1.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01262 - - mtr:MTR_5g044670 303.908