Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01261 ATGGCCTCTCAAGAACTTAATCATGAGACTAATATTGGTGTCCACTTTATCAAGATTATTCTTCAAACTACACTTCAACAAGGAAAATTGAAAGTGCCTATAAGTTTTGTGAGGAGGCATTGGAAAGGAATAACAAACCCAGTTACTCTAAGGCTTCCAAATTCGACCGAAAAGAAAGTTTCTTGGGAGAAAACTAGTGAttatgatgttttgttttgcAATGGTTGGAAAGAATTTGCAAATTATTTGTCTTTGAGAGATTCACAAATTTTGGTGTTTCAATATCAAGGAAATTCGCTCTTTAATGTGATTGGATTCGGAAAATGCGGATTAGAAATAAAATACCTTTTAAGAGAAACTAGTGAAAAAGTTGAAGAAGTCGAAGAAAGCAACTGTTCTTTAAAAATTATTGAAGAGCCGCCATTATTGCGGGGTAAAAGGTCAAAATCTTCATCGCGGTCTTCTAAAACTTGTAAGAAGATTAAAATCATCCCAAATGAACAAAAAGAATTTAAGCATGAGAAGAGAAAGGTCCAAGCACATCCAAGATTTCCTAATTTTAAGAATATGGACAATGGTTATAGTTGTGATGATCTTAAGGAGAGAAGCAGAGTTTTGCATGAAAAagtgaagaaaaatttcaaatctgATAAGGACTTCTTCTCATCTATGATTCACAAGACATACATTGAGAGAAATACCTTGGGCATACCAATTGAGTTTGCTAAGACACATCTGCATAGGATGGAAGGAAGAAATGCTACACTTTTTGTTGACCAAGAAAGAACATGGAATGTGAATTTGAAGCTCCGTTTAAATAGACAATTTACACTTGCAGATGGTTGGAGTAAATTTTGTGCTGACAATGATTTGAAATTTGGTGATGTTTGTGTTTTTATACTAAATAAATGCAAAGGAACAGTTTCATTCCAAGTTGTTATTTTCTCTCTGGAAAAGGACATGAAGACTCCATATTTTCAagGATATACCAATAAACTATATTAG 1005 0.3224 MASQELNHETNIGVHFIKIILQTTLQQGKLKVPISFVRRHWKGITNPVTLRLPNSTEKKVSWEKTSDYDVLFCNGWKEFANYLSLRDSQILVFQYQGNSLFNVIGFGKCGLEIKYLLRETSEKVEEVEESNCSLKIIEEPPLLRGKRSKSSSRSSKTCKKIKIIPNEQKEFKHEKRKVQAHPRFPNFKNMDNGYSCDDLKERSRVLHEKVKKNFKSDKDFFSSMIHKTYIERNTLGIPIEFAKTHLHRMEGRNATLFVDQERTWNVNLKLRLNRQFTLADGWSKFCADNDLKFGDVCVFILNKCKGTVSFQVVIFSLEKDMKTPYFQGYTNKLY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01261 334 SUPERFAMILY DNA-binding pseudobarrel domain 15 107 IPR015300 -
Tsu01g01261 334 Pfam B3 DNA binding domain 220 310 IPR003340 GO:0003677
Tsu01g01261 334 Gene3D - 10 109 IPR015300 -
Tsu01g01261 334 CDD B3_DNA 15 106 IPR003340 GO:0003677
Tsu01g01261 334 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Tsu01g01261 334 ProSiteProfiles B3 DNA-binding domain profile. 220 318 IPR003340 GO:0003677
Tsu01g01261 334 PANTHER B3 DOMAIN-CONTAINING 12 316 - -
Tsu01g01261 334 SUPERFAMILY DNA-binding pseudobarrel domain 215 316 IPR015300 -
Tsu01g01261 334 SMART B3_2 16 109 IPR003340 GO:0003677
Tsu01g01261 334 SMART B3_2 220 318 IPR003340 GO:0003677
Tsu01g01261 334 CDD B3_DNA 220 316 IPR003340 GO:0003677
Tsu01g01261 334 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 316 - -
Tsu01g01261 334 Gene3D - 199 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01261 Tsu-Chr1 11701676 11703732 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01261 16 308 B3 DNA Binding Superfamily AT3G18990 25.000 1.10e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01261 B3 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01261 - - mtr:MTR_4g119990 438.343