Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01260 ATGACTTGCAACCAAAGAAATAACGATACTCACCCCTCTAGTATCATTCGTTTCTTTAAGATTGTTACCCCAACAAATCTTCAAGATGGAAATATTAGAATTCCAAATGCTTTCACTAAGATACATAGTGGTAATGTGTCAAACCAAATGTTTCTCAAGACTCCAGATGACAAAGAATGGGAAATACATTTGACTAAAGAGGATGGTAATATTTGGATTCAAAAAGGTTTTAAGGAATTTGCTACACATTATTCATTAGATCATGGACACATGGTGATGTTTCAATATGAGAAAAACTTTCATTTTAAGGTTCACATATTTGACAAAACTACTCTTGAAATTGAATATCATGCTTATGGTGGAAACCAACAACATCATGAACAGAACAGCCGAATTGAAATTTTTGATGAGCATCTTCCATGCAGGAAGGTTAgaccaaaatcacaaatttcAAAACCTCAACCATATAAGAAATTGAGATTTGACACAAGTGAAGATGTTGGAACAAGTTCCAAATTGCATAACTTGCCTAAACCTGTCCAAGTTAAAGAGGAGAATGATGATACCACTGTATTCCGAAATATGAAGCATGATCAAGAGCAGGAGAATTTAACTTCTAAAATAGAAGAAGCTTTAAAAAAAGCAAGAAACTACAAAtctaaaaatccatttttcacAGTTCTCATGACATATTCTTATGTTAATCAAGACATGTATGTTCCTTTagattttgaacaaaataatttgaagaaaGAGCAATGCGAAATCCTACTTCGCGTCTTGGATGATGAGAGAACTTGGATCGTTAAATATTGTCAGAGAAGAATTAGTATTGGATGGAaaacatttgtatctgataataatttgaaagtgGGAGATGTTTGTCTTTTTGAGATGATCAATAGAAAATCCTATGCTTTTAAAGTACTATTTTTTCGACTTGACGAAAAACTACATTCCTCTCCACCACAAGTTCATGGAGTTAATAGGTTAGAAACTGCAGGAATCACAGAAGTTGAAAGTAAAGCTATTATGTCATATACAGGAAGTATGGCAACTGAAAGAAATTCACTGCAGGCTAGTCCAATGTCCTTCAAAAATTCTGAAGCTAAGAAAGAAGCCAATCAATTCACATCCACTTTGGAAAATCCACATTTCACTATCAAATTGAAATCTAATCATTGGAACGTTTACAAACCGCGTATACAAATTTCGTTCGCAAGGAAGTACTTGTGTCTTAAAAAGAAGATTATAAAGTTGCGGTTTGATGAAGAATTGTGGACTGTAAATTTGGCATCTTATCCCTCTGAACCAGCAGTCAAGTTGAGTGAAGGTTGGAGTCAGTTTGTAGAAGAAAACAAATTGCAGCCTGGAGATGGTCTAAAGCCAAGGGATCTACTTGCTCCTTTTCTGTTAGCGGTAGAGGGTCTTAGTGGGGCTATTAGGAGGGCGGAGGATCTAGGTCTGTACACTGGTTTTAAAGTTGGAAATAATGGGTTCTCGGTTTTCCACCTTCAATATGCTGATGATACAATATTCTTAGGGGAGGCTAAGGTGACGAATATGTGGTTGTTAAAAGTAATCCTTCGTTGTTTGGAGCTTGCTTCTGGTCTTAAGTCAGAGCAGCAGTTGGATATGGCAGGGGAGATGAGAAACTGGGCGGATGGAGAGTGGGTGTGGGATTTTAGGTGGATGACTGAGTTGTCTATTCAAGATCTCCATAACTTGGATGAGCTTCGGGAGGTGGTGACTGAGGCGTCGAGATTAGGGGATGTAGACTCTTGA 1785 0.3546 MTCNQRNNDTHPSSIIRFFKIVTPTNLQDGNIRIPNAFTKIHSGNVSNQMFLKTPDDKEWEIHLTKEDGNIWIQKGFKEFATHYSLDHGHMVMFQYEKNFHFKVHIFDKTTLEIEYHAYGGNQQHHEQNSRIEIFDEHLPCRKVRPKSQISKPQPYKKLRFDTSEDVGTSSKLHNLPKPVQVKEENDDTTVFRNMKHDQEQENLTSKIEEALKKARNYKSKNPFFTVLMTYSYVNQDMYVPLDFEQNNLKKEQCEILLRVLDDERTWIVKYCQRRISIGWKTFVSDNNLKVGDVCLFEMINRKSYAFKVLFFRLDEKLHSSPPQVHGVNRLETAGITEVESKAIMSYTGSMATERNSLQASPMSFKNSEAKKEANQFTSTLENPHFTIKLKSNHWNVYKPRIQISFARKYLCLKKKIIKLRFDEELWTVNLASYPSEPAVKLSEGWSQFVEENKLQPGDGLKPRDLLAPFLLAVEGLSGAIRRAEDLGLYTGFKVGNNGFSVFHLQYADDTIFLGEAKVTNMWLLKVILRCLELASGLKSEQQLDMAGEMRNWADGEWVWDFRWMTELSIQDLHNLDELREVVTEASRLGDVDS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01260 594 CDD B3_DNA 384 459 IPR003340 GO:0003677
Tsu01g01260 594 PANTHER B3 DOMAIN-CONTAINING 12 313 - -
Tsu01g01260 594 Gene3D - 204 316 IPR015300 -
Tsu01g01260 594 Gene3D - 364 462 IPR015300 -
Tsu01g01260 594 PANTHER B3 DOMAIN-CONTAINING 356 459 - -
Tsu01g01260 594 CDD B3_DNA 223 313 IPR003340 GO:0003677
Tsu01g01260 594 Gene3D - 13 111 IPR015300 -
Tsu01g01260 594 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 313 - -
Tsu01g01260 594 CDD B3_DNA 17 108 IPR003340 GO:0003677
Tsu01g01260 594 ProSiteProfiles B3 DNA-binding domain profile. 223 315 IPR003340 GO:0003677
Tsu01g01260 594 Pfam B3 DNA binding domain 18 109 IPR003340 GO:0003677
Tsu01g01260 594 Pfam B3 DNA binding domain 224 313 IPR003340 GO:0003677
Tsu01g01260 594 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 356 459 - -
Tsu01g01260 594 Coils Coil 194 221 - -
Tsu01g01260 594 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Tsu01g01260 594 SUPERFAMILY DNA-binding pseudobarrel domain 13 109 IPR015300 -
Tsu01g01260 594 SUPERFAMILY DNA-binding pseudobarrel domain 381 461 IPR015300 -
Tsu01g01260 594 SMART B3_2 224 315 IPR003340 GO:0003677
Tsu01g01260 594 SMART B3_2 18 110 IPR003340 GO:0003677
Tsu01g01260 594 SMART B3_2 387 477 IPR003340 GO:0003677
Tsu01g01260 594 SUPERFAMILY DNA-binding pseudobarrel domain 218 314 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01260 Tsu-Chr1 11689483 11695881 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01260 18 357 B3 DNA Binding Superfamily AT3G18990 25.729 9.58e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01260 B3 1.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01260 - - mtr:MTR_8g103940 570.081