LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01259	atggatccTCAAAACCCAAACCCAGCTTTTCCTTCGGCACCACCTGGTATTCCTAACCCAGTTCCAATCCTTGCTCCGAAGCAAGAGCCACTCGACGAACCACTTCAACCGAACCTAAATAATCTTCCAAACCTCAATCTGAACCTCAATTTTAGCCTCGATAATATTTCTCAAGAACAAACCCTAACCTGTTCAGACGATTTTCATCGTGTGGCTGAGCTTTTCCGAACCAATTTCAGTACAGGATTTCAACAAATTCAAAACGACGTCGTTGATGATCCTAATTCACGCGCCATCGTTCCTGTTCCAGACGCGCCGCGAAATGAGGAGAATAATAATAGCAACGCTCCGCCCGGTGAAGTTGCGGCGCAGAGACTTCAACGGAGATATAAAGAGCTTGTTCGTGTTTCAGATCTTGGTTTACCGGATCAACGACAGTTTCGTGAAATGGTTAGAAGAACGAGAATGGTTTATGATTCAATTCGAGTTTTGGCTGTTgtggaagaagaaaagagagtTGATGTTCGGAGAGCGAGAAGCGATTTGAGAGCTTCGACGATAATGAGGAGTCATGGTTTGTGGATGAATCGTGATAAGAGAATTGTTGGCGCAATTCCTGGTGTTTGCATTGGTGATGTTTTTCTTTATAGAATGGAATTAGTTGTGGTTGGTTTACATGGTCAACCACAAGCCGGGATTGATTATTTACCGGGTAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCGGGTGGTTATGAGGATGATGTTGATCAAGGTGATGTTATTATTTATTCTGGTCATGGTGGTCAAGATAAGAATTCGAGACAAGTTTTTCATCAGAAGTTGGAAGGTGGGAATCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTGGTGTTCGGTGTGAAGGTACTTCTTCTGCTTCTGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTGTTGAATGTTGGTTTGATGTTGGTAAATCGGGTTTTGGTGTATATAAGTATAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTCGGTTTTGAAGGAGGCTCTTATGCTTAGGAGAGATCCTTTATGTTTTAAACCTATGTGTGTTTTATCGCTTGATATTGCCAATGGGAAGGAGAGTGTTGGTATTAGGCTATTTAATGATATTGATAGGAATCATGATCCAATGTGTTTTGAGTATCTTCCGAAGGCTACTTTTCCACAGTTTGTGTTTCATCAGAGCGGGAAGACGACAGGTTGTGAATGTGTGGATGGTTGTGCGGAGGGATGCTTTTGTTTCATGAAGAATGGAAATGAGTTTCCATTTAGTCAAAACGGGCTTCTCTTGAAAGGGAGGCCGTTACTTTTTGAATGTGGTCCTTTTTGCCATTGTCCGCCTCATTGTCGTAACCGTGTTACGCAAAAAGGTCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGCGCATTCATATGCGAGTACACTGGGGTTGTTTTGACTAGGGAGCAAGCACAAATTTTTACCATGAATGGTGATTCATTGATATATCCTAGTCGGTTTGCTGAAAGTTGGGCGGAATGGGGTAATTTATCCTTGATAGACGCTAATTATAAACGTCCGTCATATCCATCGATTCCTCCTTTAGACTTTGCTATGGATGTATCAAGAATGAGGAATGTTGCTTGCTATATCAGTCATAGCTCAACTCCCAATGTGATGGTTCAATTTGTGCTTTATGATCACAATAATTTGATGTTCCCCCACCTTATGCTATTTGCAATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGACTATGGGGTAGCTGATGAGGAAGTGACTGGCAAGCTCGCTATATGCATTTAA	1950	0.4123	MDPQNPNPAFPSAPPGIPNPVPILAPKQEPLDEPLQPNLNNLPNLNLNLNFSLDNISQEQTLTCSDDFHRVAELFRTNFSTGFQQIQNDVVDDPNSRAIVPVPDAPRNEENNNSNAPPGEVAAQRLQRRYKELVRVSDLGLPDQRQFREMVRRTRMVYDSIRVLAVVEEEKRVDVRRARSDLRASTIMRSHGLWMNRDKRIVGAIPGVCIGDVFLYRMELVVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDQGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRCEGTSSASGKVYVYDGLYRIVECWFDVGKSGFGVYKYKLWRIDGQAKMGSSVLKEALMLRRDPLCFKPMCVLSLDIANGKESVGIRLFNDIDRNHDPMCFEYLPKATFPQFVFHQSGKTTGCECVDGCAEGCFCFMKNGNEFPFSQNGLLLKGRPLLFECGPFCHCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQIFTMNGDSLIYPSRFAESWAEWGNLSLIDANYKRPSYPSIPPLDFAMDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHLMLFAMENIPPLREFSLDYGVADEEVTGKLAICI	649

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu01g01259	649	SUPERFAMILY	SET domain	376	636	IPR046341	-
Tsu01g01259	649	Pfam	SAD/SRA domain	202	356	IPR003105	-
Tsu01g01259	649	MobiDBLite	consensus disorder prediction	90	120	-	-
Tsu01g01259	649	Pfam	SET domain	503	635	IPR001214	GO:0005515
Tsu01g01259	649	ProSiteProfiles	Pre-SET domain profile.	431	489	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
Tsu01g01259	649	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	37	648	IPR025794	GO:0016571
Tsu01g01259	649	Gene3D	SET domain	361	648	IPR046341	-
Tsu01g01259	649	ProSiteProfiles	YDG domain profile.	203	352	IPR003105	-
Tsu01g01259	649	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED	23	644	-	-
Tsu01g01259	649	SUPERFAMILY	PUA domain-like	184	365	IPR015947	-

Showing 1 to 10 of 19 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01259	Tsu-Chr1	11678928	11684148	Proximal

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01259	148	637	Su(var)3-9 homologs	AT5G04940	38.153	1.35e-102	325

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Tsu01g01259		SAD_SRA	1.3e-47	CL0178

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01259	K11420		-	gmx:100795514	940.258

Showing 1 to 1 of 1 entries

Previous1Next