Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01259 atggatccTCAAAACCCAAACCCAGCTTTTCCTTCGGCACCACCTGGTATTCCTAACCCAGTTCCAATCCTTGCTCCGAAGCAAGAGCCACTCGACGAACCACTTCAACCGAACCTAAATAATCTTCCAAACCTCAATCTGAACCTCAATTTTAGCCTCGATAATATTTCTCAAGAACAAACCCTAACCTGTTCAGACGATTTTCATCGTGTGGCTGAGCTTTTCCGAACCAATTTCAGTACAGGATTTCAACAAATTCAAAACGACGTCGTTGATGATCCTAATTCACGCGCCATCGTTCCTGTTCCAGACGCGCCGCGAAATGAGGAGAATAATAATAGCAACGCTCCGCCCGGTGAAGTTGCGGCGCAGAGACTTCAACGGAGATATAAAGAGCTTGTTCGTGTTTCAGATCTTGGTTTACCGGATCAACGACAGTTTCGTGAAATGGTTAGAAGAACGAGAATGGTTTATGATTCAATTCGAGTTTTGGCTGTTgtggaagaagaaaagagagtTGATGTTCGGAGAGCGAGAAGCGATTTGAGAGCTTCGACGATAATGAGGAGTCATGGTTTGTGGATGAATCGTGATAAGAGAATTGTTGGCGCAATTCCTGGTGTTTGCATTGGTGATGTTTTTCTTTATAGAATGGAATTAGTTGTGGTTGGTTTACATGGTCAACCACAAGCCGGGATTGATTATTTACCGGGTAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCGGGTGGTTATGAGGATGATGTTGATCAAGGTGATGTTATTATTTATTCTGGTCATGGTGGTCAAGATAAGAATTCGAGACAAGTTTTTCATCAGAAGTTGGAAGGTGGGAATCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTGGTGTTCGGTGTGAAGGTACTTCTTCTGCTTCTGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTGTTGAATGTTGGTTTGATGTTGGTAAATCGGGTTTTGGTGTATATAAGTATAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTCGGTTTTGAAGGAGGCTCTTATGCTTAGGAGAGATCCTTTATGTTTTAAACCTATGTGTGTTTTATCGCTTGATATTGCCAATGGGAAGGAGAGTGTTGGTATTAGGCTATTTAATGATATTGATAGGAATCATGATCCAATGTGTTTTGAGTATCTTCCGAAGGCTACTTTTCCACAGTTTGTGTTTCATCAGAGCGGGAAGACGACAGGTTGTGAATGTGTGGATGGTTGTGCGGAGGGATGCTTTTGTTTCATGAAGAATGGAAATGAGTTTCCATTTAGTCAAAACGGGCTTCTCTTGAAAGGGAGGCCGTTACTTTTTGAATGTGGTCCTTTTTGCCATTGTCCGCCTCATTGTCGTAACCGTGTTACGCAAAAAGGTCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGCGCATTCATATGCGAGTACACTGGGGTTGTTTTGACTAGGGAGCAAGCACAAATTTTTACCATGAATGGTGATTCATTGATATATCCTAGTCGGTTTGCTGAAAGTTGGGCGGAATGGGGTAATTTATCCTTGATAGACGCTAATTATAAACGTCCGTCATATCCATCGATTCCTCCTTTAGACTTTGCTATGGATGTATCAAGAATGAGGAATGTTGCTTGCTATATCAGTCATAGCTCAACTCCCAATGTGATGGTTCAATTTGTGCTTTATGATCACAATAATTTGATGTTCCCCCACCTTATGCTATTTGCAATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGACTATGGGGTAGCTGATGAGGAAGTGACTGGCAAGCTCGCTATATGCATTTAA 1950 0.4123 MDPQNPNPAFPSAPPGIPNPVPILAPKQEPLDEPLQPNLNNLPNLNLNLNFSLDNISQEQTLTCSDDFHRVAELFRTNFSTGFQQIQNDVVDDPNSRAIVPVPDAPRNEENNNSNAPPGEVAAQRLQRRYKELVRVSDLGLPDQRQFREMVRRTRMVYDSIRVLAVVEEEKRVDVRRARSDLRASTIMRSHGLWMNRDKRIVGAIPGVCIGDVFLYRMELVVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDQGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRCEGTSSASGKVYVYDGLYRIVECWFDVGKSGFGVYKYKLWRIDGQAKMGSSVLKEALMLRRDPLCFKPMCVLSLDIANGKESVGIRLFNDIDRNHDPMCFEYLPKATFPQFVFHQSGKTTGCECVDGCAEGCFCFMKNGNEFPFSQNGLLLKGRPLLFECGPFCHCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQIFTMNGDSLIYPSRFAESWAEWGNLSLIDANYKRPSYPSIPPLDFAMDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHLMLFAMENIPPLREFSLDYGVADEEVTGKLAICI 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01259 649 SUPERFAMILY SET domain 376 636 IPR046341 -
Tsu01g01259 649 Pfam SAD/SRA domain 202 356 IPR003105 -
Tsu01g01259 649 MobiDBLite consensus disorder prediction 90 120 - -
Tsu01g01259 649 Pfam SET domain 503 635 IPR001214 GO:0005515
Tsu01g01259 649 ProSiteProfiles Pre-SET domain profile. 431 489 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01259 649 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 648 IPR025794 GO:0016571
Tsu01g01259 649 Gene3D SET domain 361 648 IPR046341 -
Tsu01g01259 649 ProSiteProfiles YDG domain profile. 203 352 IPR003105 -
Tsu01g01259 649 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 23 644 - -
Tsu01g01259 649 SUPERFAMILY PUA domain-like 184 365 IPR015947 -
Tsu01g01259 649 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 23 644 - -
Tsu01g01259 649 Pfam Pre-SET motif 387 484 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01259 649 ProSiteProfiles SET domain profile. 492 635 IPR001214 GO:0005515
Tsu01g01259 649 SMART preset_2 384 476 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01259 649 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g01259 649 Gene3D - 200 360 IPR036987 -
Tsu01g01259 649 SMART set_7 492 641 IPR001214 GO:0005515
Tsu01g01259 649 MobiDBLite consensus disorder prediction 1 39 - -
Tsu01g01259 649 SMART G9a_1 198 356 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01259 Tsu-Chr1 11678928 11684148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01259 148 637 Su(var)3-9 homologs AT5G04940 38.153 1.35e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu01g01259 SAD_SRA 1.3e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01259 K11420 - gmx:100795514 940.258