Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01257 ATGGATTCTCAAAACCCAAATCCTAACCGAGGTTTTCCTTCATCACCACCAGGTTTCTTAGCTCCAATTTTAACCGTGAAGCAAGAGCCTTACGATGAACCACCTCAACTGAGTGAAGTCACGGAACATAGACTTCAACGCTGCGTTAAAGATCTCGTTCGTGTGTCAGATCTCGATTTACAAGACCGGAGTAAATTTCGTGCAACCGTTAGAACTATTAGAATGGTGTATGATTTCCTTCGTGTTATGGccatggaggaagaagatgaagaagtcGATGTTCATAGCGAAAGAGTCAATCGGAGAGCATCTGCTATGATGAGGCGTTGTGGGTTGTTGCTAAACCGTGACAAGAAAATTATTGGCACCATTCCTGGAATTTGTATTGGAGATGTATTTTTCAACATAATGGAATTGGCTGTGGTTGGTTTACATGGTCAGCCAAAATCCGGAATTGATTATTTGCCTAATGATATGAGTTTGAATGGCGAACCGATTGCAACAAGTGTGATTGTTTCGGGTGAATATGATAATAGTGTTGATCTTGGTGATGTTATTATTTATTCTTGTCATGGTGGTCATAATAATAAGAATTCGAGTCAAGTTTTAAATCAGAAGTTGGAAGATGAGAACCTTGCTATGGAGAGAAGTATGCATTATGGAATTGAAGTTAGGGTTATTCGCGGTGTTCAATTAGAAGGTACTTCTTCGACATCTagtaagttttatttttacaacGGACTATATAGGATTGTTGATTGTAGATTTGATGTTGGTGTTTATACGTTTAAACTAAAGAGGGTTGAAGGTCAAATGAAGACAGATAGTTTGGTTATGAAGGAGGCTCTTAGGACTAGGAATCATCCTTTATGGTATAAACCCATGTTTGTTTTAGCTCTTGACATTTCCAACAAGAAGGAGAATGTTGGTGTTAGGCTATTCAATGATGTTGACGGGAATAACGACCCAATTAGCTTTGAGTATCTTTTGAGAGCTGTTTTTCCACCGCTTATCGTTCATCAGAGCAAGAGGGTGGTGGGCTGTAAATGCATCGGTAAATGTGTCGAAGGATGTTTCTGTTTCATGAAGAATGGAAATGAATGTCCATACACTCAAAGCGGGATTCTCTTGAAAGGGAGACCGTTAGTCTTTGAATGTGGCCCTTTTTGTAGTTGTCCGCCTAATTGTCGTAACCGTGTTACACAAAATGGGCTTAAACACAGGTTGGAAGTGTTTAGATCTAAGGAGACTGGTTGGGGAGTTAGGTCTTTGGACGTTATTCAAGAGGGTTCTTTCCTATGCGAGTACACTGGAGTATTTTTGACTAAGGAGCAAGCAGAAATTTTTATCATGAATGGCGATTCATTGATATATCCGAGTCATTTTACTGAAAGTTGGAAGGAATGGGGAAATCTATCCCTGATAGACGCTAGTTATAAACGTCCGTTGTATCCATCCATTCCTCCATTAGAGTTTGCTATGGATGTCTCAACAACAAGGAATGTTGCTTCCTATATCAGTCATAGCTCAACTCCAAATGTGATGGTTCAATTTGTGCTATATGATCACAATGATTTGATGTACCCTCACCTTATGTTGTTTGCAATGGAGAACATCCCTCCAATGAGAGAGTTCAGCCTTGACTATGGAGTAGCTGATGATGACTTGGCTTAA 1674 0.3871 MDSQNPNPNRGFPSSPPGFLAPILTVKQEPYDEPPQLSEVTEHRLQRCVKDLVRVSDLDLQDRSKFRATVRTIRMVYDFLRVMAMEEEDEEVDVHSERVNRRASAMMRRCGLLLNRDKKIIGTIPGICIGDVFFNIMELAVVGLHGQPKSGIDYLPNDMSLNGEPIATSVIVSGEYDNSVDLGDVIIYSCHGGHNNKNSSQVLNQKLEDENLAMERSMHYGIEVRVIRGVQLEGTSSTSSKFYFYNGLYRIVDCRFDVGVYTFKLKRVEGQMKTDSLVMKEALRTRNHPLWYKPMFVLALDISNKKENVGVRLFNDVDGNNDPISFEYLLRAVFPPLIVHQSKRVVGCKCIGKCVEGCFCFMKNGNECPYTQSGILLKGRPLVFECGPFCSCPPNCRNRVTQNGLKHRLEVFRSKETGWGVRSLDVIQEGSFLCEYTGVFLTKEQAEIFIMNGDSLIYPSHFTESWKEWGNLSLIDASYKRPLYPSIPPLEFAMDVSTTRNVASYISHSSTPNVMVQFVLYDHNDLMYPHLMLFAMENIPPMREFSLDYGVADDDLA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01257 557 Pfam Pre-SET motif 302 399 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01257 557 SUPERFAMILY PUA domain-like 106 283 IPR015947 -
Tsu01g01257 557 SUPERFAMILY SET domain 290 551 IPR046341 -
Tsu01g01257 557 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 38 554 - -
Tsu01g01257 557 Pfam SAD/SRA domain 121 271 IPR003105 -
Tsu01g01257 557 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 38 554 - -
Tsu01g01257 557 Gene3D - 119 276 IPR036987 -
Tsu01g01257 557 SMART preset_2 299 391 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01257 557 SMART set_7 407 556 IPR001214 GO:0005515
Tsu01g01257 557 ProSiteProfiles YDG domain profile. 122 272 IPR003105 -
Tsu01g01257 557 Pfam SET domain 418 550 IPR001214 GO:0005515
Tsu01g01257 557 SMART G9a_1 117 271 IPR003105 -
Tsu01g01257 557 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g01257 557 ProSiteProfiles Pre-SET domain profile. 346 404 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01257 557 Gene3D SET domain 277 555 IPR046341 -
Tsu01g01257 557 ProSiteProfiles SET domain profile. 407 550 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01257 Tsu-Chr1 11657835 11659508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01257 79 552 Su(var)3-9 homologs AT1G73100 35.391 5.66e-85 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu01g01257 SAD_SRA 1.1e-35 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01257 K11420 - gmx:100795514 708.368