Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01256 ATGAAACCCGAATTATACGAAATCTCCGACGATGAATGGGAAAATCATTCTTTCAAACCCTCACGTGTCCTCAAACGACGTCGCTCTCCACCGCCGCCACTTGATTCCTTTGCTTATAAACCTCCCTCCGAACCCCAACCCGAACCTGTTGCCTCCGACGATGACGATTGCGTCGAAATCAATCAAATAACcgataataacaataacaacaacttTGAATGCCTTGATGATTTAGAGGATGCTGATGTGGATGATGTTGAAGCGGCTCCAACGTCGAGACCTGGAAGGAGGTTTATAATCGacgatgaagatgaagaagatggcGACGGTGTCGGTGTTAATGTTGATGTGTTTGATATTGATTCAACGGAAGATGAAGTGGAGGATGAAATTGATGAAGTGAATGAAGGTGATTTGGTTGGTAGGGCTTTGCAAAAGTGTGCGAGAATTTCTGTGGAGTTGAAAGGAGAGTTGTTTGGGTCTTCTGGAGCTGCTTGTGAGAGATATTCTGAGGTGGAATCTTCTTCAGTTAGAATCGTTACTCAGGATGATGTTGATGTTGCGTGTGGTTCTGAGGATTCGGATTTTCAACCTCTGTTAAAGCCGTATCAACTTGTGGGTGTTAATTTTTTGCTTCTGTTGTATAAGAAGGGGATTGGAGGAGCTATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAATGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGTCCATCTGtttctgttcttcaatatcatGGGGCTACACGCACAGCATACTCCAAGGAGTTGAACTCTCTGTCCAAGTCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAACGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGTTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAGTGCGAACCAACGCTTGATGCTGACAGGGACACCACTTCAAAATGATCTACATGAGTTATGGTCTATGTTAGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGATTTAAAAAAGTTACTAAGTGCAGAAGATAGAGATTTAGTTAGTCGTATGAAGTCTATCTTAGGGCCATTTATTTTGCGACGTCTGAAATCTGATGTAATGCAAcaacttgttcaaaaaacacAGCAGGTTCAATATGTCATAATGGAAAAGCAACAGGAACATGCATACAGGGAAGCCATTGAAGAGTATCGCGCTTTTTCACAAGCTCGGTTAACAAAATGTTCTGATATGAACTCAAAAAGTATTCTTGAAGCTCTTCCTCGACggcaaataaataattattttgttcaGTTCCGGAAGATAGCAAATCACCCCTTGTTGATACGGAGAATTTATAATGATGAGGATGTTGTTCGCTTTGCTAGGAAGCTGCATCCAATAGGTGCTTTTGGCTTTGAATGTACTATGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGATTTCTCCATTCACCGGCTTTTACTTCATTATAGTATCAATGATAGAAAGGGGATCCTTTCAGATAAGTATGTTATGCTTTCCGCAAAATGTCGGGCTTTAGCAGAACTTCTTCCGTCACTAAAGAAGAGTGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGACAAACAATAGTCGACACATTCAATAATGATACGTCAATATTTGCTTGTTTGCTTTCCACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCCGAAGACCGTTGTCATCGAATTGGTCAGACAAAGCCTGTAACGATTTATAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCGAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGTCCACAGAAGAGATCAAAGAAGGCGACATGCCTGAAAAGACCATGGGAGAGATATTGTCCgcaattttgttaaaatattga 2253 0.3946 MKPELYEISDDEWENHSFKPSRVLKRRRSPPPPLDSFAYKPPSEPQPEPVASDDDDCVEINQITDNNNNNNFECLDDLEDADVDDVEAAPTSRPGRRFIIDDEDEEDGDGVGVNVDVFDIDSTEDEVEDEIDEVNEGDLVGRALQKCARISVELKGELFGSSGAACERYSEVESSSVRIVTQDDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYKKGIGGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKRWCPSVSVLQYHGATRTAYSKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARSANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDRDLVSRMKSILGPFILRRLKSDVMQQLVQKTQQVQYVIMEKQQEHAYREAIEEYRAFSQARLTKCSDMNSKSILEALPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLHPIGAFGFECTMDRVIEELKSYNDFSIHRLLLHYSINDRKGILSDKYVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESTEEIKEGDMPEKTMGEILSAILLKY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01256 750 SMART helicmild6 605 688 IPR001650 -
Tsu01g01256 750 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g01256 750 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 73 747 - -
Tsu01g01256 750 CDD DEXHc_Snf 200 393 - -
Tsu01g01256 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 579 729 IPR001650 -
Tsu01g01256 750 CDD SF2_C_SNF 566 699 - -
Tsu01g01256 750 Gene3D - 558 745 IPR027417 -
Tsu01g01256 750 Gene3D - 200 435 IPR038718 -
Tsu01g01256 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 426 IPR027417 -
Tsu01g01256 750 PANTHER SNF2/RAD54 HELICASE FAMILY 73 747 - -
Tsu01g01256 750 Pfam Helicase conserved C-terminal domain 576 688 IPR001650 -
Tsu01g01256 750 SMART ultradead3 196 401 IPR014001 -
Tsu01g01256 750 MobiDBLite consensus disorder prediction 1 54 - -
Tsu01g01256 750 Gene3D - 436 511 IPR027417 -
Tsu01g01256 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 391 IPR014001 -
Tsu01g01256 750 MobiDBLite consensus disorder prediction 34 48 - -
Tsu01g01256 750 Pfam SNF2-related domain 220 506 IPR000330 GO:0005524|GO:0140658
Tsu01g01256 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 729 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01256 Tsu-Chr1 11637094 11646237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01256 221 739 RAD5 or RAD16-like Gene Family AT5G22750 26.856 5.86e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g01256 SNF2_N 8.4e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01256 K14439 - gmx:100806323 1200.65