Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01255 ATGGCAACAAATAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTACCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAGCCATCTTGTGTTCACCATGACCCTTCTAGAGCACTTGGTGATCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAAAAAAAGTGGAAATGTGAAAAATGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATCACACATAGGGCTTTTTGTGATGCATTAGCACATGAAAATGCAAGACACCCTTCAAACATGAACCCTTTAGCAACTCATCTATTTTCCACAAGTCACATGGGTTTAGCCCTAAACCAAAATCAACAACCTTCCACAAACAACAATATCTTAACCCTAGGTAATATTCCTTGTACACCAAAATTTGAACATCATTTAATCTCACCTTTGCAtggatcatcatcatcatttggtcaacaacaacaacaatcaccTCAACAACAATCAATGTCTTCATCacctttttttataaatgatcCAAATCAAACTTTTCAACAAGACCATCTTCAAGGACCATTTTCAAACAAacaacttcatcttcatcatggTCTCATGCAACTTCCTGATCTTCAAGGTAATACCAATAATAATACATCTTCTTCATCGGTATCGCCGTTTAACCTAAGCTTCTTTCCTAATAGTAACAACACATTGCATGAACAATTCAATAATATAAGTGAagctcatcatcatcatcaacaacatgatcatcatcatcatgaagGTTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAAGAGAACATGTTATCGTCGCCGCACATGTCGGCAACTGCATTGCTTCAAAAAGCTTCTCAAAAAGGTTCAACATCAACAACTATCAATAACAATGGTGTAGAATCTAATGAAGGAATAAGATCAAGCATGGAAAATGAACACAATCAACATCTACATGGTTTGATGAACTCTCTTGGGAATGGAAACACTTCAATATATGATAACAATAACCTTGGTCAGTTTCACAATGTTGAGGAGAATAAAAAGATGTCACAACAAAGTCTTGGTAATTTGTGCTTTGGAGGGTCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTAATAATACAAGTGGTGGTGGATTTTCACAAAGAGATCAACAATTACACTCAATGAGTGCAATGAACAACATGGATCCTAAAATGGAATCAACACAAGGGAACCAACCTTTTTGA 1407 0.3312 MATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTSHMGLALNQNQQPSTNNNILTLGNIPCTPKFEHHLISPLHGSSSSFGQQQQQSPQQQSMSSSPFFINDPNQTFQQDHLQGPFSNKQLHLHHGLMQLPDLQGNTNNNTSSSSVSPFNLSFFPNSNNTLHEQFNNISEAHHHHQQHDHHHHEGFSSLFGNSSMQQENMLSSPHMSATALLQKASQKGSTSTTINNNGVESNEGIRSSMENEHNQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEENKKMSQQSLGNLCFGGSDKLTLDFLGVGGMVRNMSNNTSGGGFSQRDQQLHSMSAMNNMDPKMESTQGNQPF 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01255 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 446 - -
Tsu01g01255 468 SMART c2h2final6 6 28 IPR013087 -
Tsu01g01255 468 SMART c2h2final6 47 77 IPR013087 -
Tsu01g01255 468 SMART c2h2final6 82 102 IPR013087 -
Tsu01g01255 468 MobiDBLite consensus disorder prediction 192 232 - -
Tsu01g01255 468 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Tsu01g01255 468 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Tsu01g01255 468 PANTHER FINGER PROTEIN PCP1-LIKE 1 446 - -
Tsu01g01255 468 MobiDBLite consensus disorder prediction 307 355 - -
Tsu01g01255 468 Gene3D Classic Zinc Finger 60 139 - -
Tsu01g01255 468 MobiDBLite consensus disorder prediction 291 355 - -
Tsu01g01255 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Tsu01g01255 468 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Tsu01g01255 468 Gene3D Classic Zinc Finger 6 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01255 Tsu-Chr1 11624466 11629239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01255 1 430 C2H2 Transcription Factor Family AT2G02080 45.695 3.13e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01255 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01255 K25870 - gmx:100806198 561.992