Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01254 ATGGCAGCATCATTTTCAGCTGCTTCTTTCTTTACAATCACTGAAGAGGATCAGAATCAAAtgaatcaacaacaaaattctTCTActccatcatcatcaacaactcCAACTGCACCACCACCacagaagaaaagaagaaaccaACCTGGAACACCAAATCCAGATGCAGAAGTGGTAGCACTATCTCCCAAGAGCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTCCAAAGAGAGCAAAATTTACAACTACATAGAAGAGGACACAATTTGCCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATGTGTGTCCTGAGCCAACATGTGTTCACCATGACCCTTCTAGAGCACTTGGTGACCTCACTGGAATTAAGAAACATTATTTTAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCGAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAAGGAGTATAGATGTGATTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACACATAGGGCCTTTTGTGATGCACTTGCTCAAGAAAGTTCAAGACAACCACAATTACCAAACCAAATCACCATTAATAACTCCCACCTATTTGGAAACATTAGCAACAACAACATATCCTTAGCCTTATCTCAAATACCTCCACACCAAAACGACAACAACCAATCCACTGAAATGTTGCGTTTTGGCAACACAAGAATTTCACAATTTAACCACAACATTCTATCTACACCCCCACAACAAGCCCTTAACACCCCTCCATTTAATTTCACCACACAACAACCAAACCAAAATTACCATAATGACCATCCATCTCAAACATTCCAAGGACTAATATCATTGTCTcaactcaacaacaacaacaacatcagcAACAACATGTTTTCTGAAAATAATTTCAACAATGAAGGGACAAATAATTTCTTTTCAGAAAATTCCATAATGTGTGATCCTAACCCTAACCAAACAAGTCCTATCTCTCCTCACATGTCAGCTACAGCTTTACTACAAAAAGCTTCTCAAATGGGTGCAACTTCAAGCACTAACAAtgccaacaacaacaacacttcTTCATTACTAAGAAACTTTGGTGTTTCATCTTCATTAGAAACAAAGGTTGTTGGTGGAAGTTATGATGGATTAAGTACTAGAGATTTTCTTGGAGTTGGACAAATAGTTATGAGAAATATGAATGGAGGAGGAGTTAGTCAAAGAGGTCAACGCAACATGGAAACTGAGAAAAATGGATATTTTGGTGTGGGAGGTAACTTTGAGTGA 1347 0.3497 MAASFSAASFFTITEEDQNQMNQQQNSSTPSSSTTPTAPPPQKKRRNQPGTPNPDAEVVALSPKSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYVCPEPTCVHHDPSRALGDLTGIKKHYFRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPQLPNQITINNSHLFGNISNNNISLALSQIPPHQNDNNQSTEMLRFGNTRISQFNHNILSTPPQQALNTPPFNFTTQQPNQNYHNDHPSQTFQGLISLSQLNNNNNISNNMFSENNFNNEGTNNFFSENSIMCDPNPNQTSPISPHMSATALLQKASQMGATSSTNNANNNNTSSLLRNFGVSSSLETKVVGGSYDGLSTRDFLGVGQIVMRNMNGGGVSQRGQRNMETEKNGYFGVGGNFE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01254 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Tsu01g01254 448 MobiDBLite consensus disorder prediction 1 57 - -
Tsu01g01254 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 393 - -
Tsu01g01254 448 Gene3D Classic Zinc Finger 126 206 - -
Tsu01g01254 448 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Tsu01g01254 448 Gene3D Classic Zinc Finger 53 119 - -
Tsu01g01254 448 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 393 - -
Tsu01g01254 448 SMART c2h2final6 113 143 IPR013087 -
Tsu01g01254 448 SMART c2h2final6 148 168 IPR013087 -
Tsu01g01254 448 SMART c2h2final6 72 94 IPR013087 -
Tsu01g01254 448 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g01254 448 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Tsu01g01254 448 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01254 Tsu-Chr1 11610314 11617227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01254 43 413 IDZ Gene Family AT5G66730 48.878 8.96e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01254 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01254 K25870 - gmx:100818072 429.869