Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01252 ATGGGTAGTTGTGGAAGGGAAGGTGTTGTGAGACAATATGTTAGATCAAAAGTTCCTCGTTTAAGATGGACACCAGAACTTCATCGTTGCTTTGTTTATGCCATTGAAACTCTTGGTGGTCATCAAAaggCTACTCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTAACAATTTCACATGTCAAGAGCCATTTGCagATGTATAGGAGCATGAGAGGTGAATCATGTAAACAAGATAGGACTATATCCGTACATAAAAGACCATCTTTTCAGGAGCATGATGATGGGTTTGGAGATGAATCCATTGGAAAGGAATCTGATTCTCTCTTTAGCAACACTAATTTCTCACCAAAAAGAGCTAGAATCGAGAAGAAAAGTTCCTTCTCAACAGGAATCATACAATGCAGggaaagaatatgtgaagcagTTTCAAATCCATACACAACTTTTTATGATTATGTGCAGGACATGGTTCAGCAACAGCAGAAGGGAATAAAAGAGATTTCTGTTGGTTCACAATATTGCAAAATCTTTCCTATGCTACCAAAACAAGAAACTGATTTGCTCCAGGttagaaaattaaatgaaaagaaGCATGTGAATGGGAAGATTAAGAGTGTACGTGCAGAAGATGAAGTTATAAAGGGTTGTGAGTTGTCATTATCAATTTCATTGCCTCATCTTTCACCTCAAAGAAGTAATGTTTCTTCAGCCAATGATATGAGAGACTCTGGATTTTGTAACTTTATGGGTTATTCCAGTGTCCAAAACAGAATTAATTTGGACCTATCTTTGGCCATTTGA 810 0.3543 MGSCGREGVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGESCKQDRTISVHKRPSFQEHDDGFGDESIGKESDSLFSNTNFSPKRARIEKKSSFSTGIIQCRERICEAVSNPYTTFYDYVQDMVQQQQKGIKEISVGSQYCKIFPMLPKQETDLLQVRKLNEKKHVNGKIKSVRAEDEVIKGCELSLSISLPHLSPQRSNVSSANDMRDSGFCNFMGYSSVQNRINLDLSLAI 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01252 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Tsu01g01252 269 Gene3D - 18 74 - -
Tsu01g01252 269 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Tsu01g01252 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 184 269 IPR044848 GO:0003700
Tsu01g01252 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 165 IPR044848 GO:0003700
Tsu01g01252 269 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Tsu01g01252 269 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 184 269 - -
Tsu01g01252 269 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 165 - -
Tsu01g01252 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01252 Tsu-Chr1 11583673 11587595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01252 1 74 G2-like Transcription Factor Family AT1G14600 73.418 5.62e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g01252 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01252 - - gmx:100810994 315.849