Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01249 atggaaaaattagctcctcctcttcttcctcttcatcctCCTATGTTATCAAATCCATTTTATAATtcatcaaataacaaaaaacGCGATCTATCATACGACGTCGTTCATATCCCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGATTCAGTTCGATTCACCGCCAAATCAACCGTTTCACAACAACACCACACCGAAGAAACTCTCAAATTGAATCTCGGTGGTGCCGTAAACGGCGGTGGAGTTGTAAACAGAGCAAACAAACGAGTACGATCAGGATCTCCAACTTCATCATATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTATCAAAAGCTAAAGATTATCATCGACGGCATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAAGCTTTATTAGGAAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTATTGGAATTTGATGAAGGGAAAAGGAGTTGTAGAAGGAGACTTGCTGGACATAATCGTCGCCGGAGAAAAACGCAACCGGATGAAGTTGctacttcttcttctcctccGTTGAATCAGCaagttgttgctgctgctgctaaTTTGgagatttttaatttgttgactGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTCGTACAGATTCTGAATAGGATCCCTTTACCTGCTGATCTTACAGCGAAGTTGCTGGACGTTGGTAATAATTTGAATGGGAAAAATGATAACGTGCCAATGCAAACTTCATCTCCGTATCATCATCGTGATGATCAACCGAACAGTGTCCCCTCTGCCCCGTTAACTATGGACTTGCTTGCTGTTCTTTCCACCACTCCATCCACACCTGTTCAAAATGGCGGCACCAAGTCCACAACTAGTGCTGATCAAATTAGAGAACAACAATTCACTTCAGTTGGTGGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTTCCAGGAGGATGTTCGAGTTAATTTGCCATTGCAACTTTTTAACTCCTCTCCAGAAGATGACAGCCGGTCAAAATTGCCATCTTCGCGGAATTATTTTTCATCGGAAAGTAGTAACCCTGTGGACGAAAGGTCGCCGTCGTCATCTCCTCCTTTTGTGGAAATGAATTTTGGTTTGCAAGGTGGGATTAGAGGTCTCAATTCTAATAGTATTAAGACTGGAATGGGAGTCAATGCAAATAAGGAAACTAGTCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATCCAACAAACTAGTTCAGTTCAAAGTGTTCCGTTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGGAGAataatgtttaaattatttgacaaGCATCCTAGCCATTTCCCTGGAACATTGCGATCACAGATTTACAATTGGCTTTCTACTCGACCATCTGACTTGGAAAGTTACATAAGGCCCGGCTGTGTTGTCCTATCAATTTATGCTACAATGTCTTCTGCTGCCTGGGCGCAACTAGAAGAAAACTTCCTCCAACGTGTTCATTCTTTAATTCATAACTCAGATTCTGATTTGTGGAGAAATGGGAGATTTCTTGTTTATTCTGGAAGTCAGTTAGCATCACACAAAGATGGAAAGATACGCATGTGCAAACCATGGGGAACATGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCGATTGTTAGTGGACAAGAAACATCTATGTCATTGAAGGGAAGAAACCTGTCTGCTCCTGGCACAAAGTTAGTACTGATTTTCCCCTTTTCTGAATGTTGTCGTATGCTTTTTACTGGTTTGTTTTCTTACTATTTGTCCCTAAATTTTGCAGGATTCATTGCACTGGTGCTGACGGTTACACATCATCAGAAGTTATAG 2007 0.3847 MEKLAPPLLPLHPPMLSNPFYNSSNNKKRDLSYDVVHIPNDNWNPKEWNWDSVRFTAKSTVSQQHHTEETLKLNLGGAVNGGGVVNRANKRVRSGSPTSSYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVATSSSPPLNQQVVAAAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNGKNDNVPMQTSSPYHHRDDQPNSVPSAPLTMDLLAVLSTTPSTPVQNGGTKSTTSADQIREQQFTSVGGERSSGSSQSPNDDSDFQEDVRVNLPLQLFNSSPEDDSRSKLPSSRNYFSSESSNPVDERSPSSSPPFVEMNFGLQGGIRGLNSNSIKTGMGVNANKETSQSHSCTTIPLDLFKGSKSNNMIQQTSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRSQIYNWLSTRPSDLESYIRPGCVVLSIYATMSSAAWAQLEENFLQRVHSLIHNSDSDLWRNGRFLVYSGSQLASHKDGKIRMCKPWGTWRSPELISVSPLAIVSGQETSMSLKGRNLSAPGTKLVLIFPFSECCRMLFTGLFSYYLSLNFAGFIALVLTVTHHQKL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01249 668 SUPERFAMILY SBT domain 102 183 IPR036893 GO:0003677|GO:0005634
Tsu01g01249 668 MobiDBLite consensus disorder prediction 321 396 - -
Tsu01g01249 668 MobiDBLite consensus disorder prediction 168 190 - -
Tsu01g01249 668 MobiDBLite consensus disorder prediction 350 395 - -
Tsu01g01249 668 MobiDBLite consensus disorder prediction 256 284 - -
Tsu01g01249 668 Pfam SBP domain 104 177 IPR004333 GO:0003677
Tsu01g01249 668 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 29 626 - -
Tsu01g01249 668 ProSiteProfiles Zinc finger SBP-type profile. 101 178 IPR004333 GO:0003677
Tsu01g01249 668 MobiDBLite consensus disorder prediction 321 339 - -
Tsu01g01249 668 Gene3D - 95 165 IPR036893 GO:0003677|GO:0005634
Tsu01g01249 668 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 626 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01249 Tsu-Chr1 11551218 11556042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01249 20 626 SBP-box Gene Family AT1G20980 51.964 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu01g01249 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01249 - - gmx:100812180 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01249 01 11551218 11556042 Tsu01g01249 01 11551218 11556042 ECH