Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01227 ATGGAACAAGATGACGACAAAAACAACAGCAacgaaaacaacaaaaacaaaattgggGATGGTGAAATATTTGGTGCAAATTCAAAAGGTGaatctttctttgatttttcaCTCAAAAAAAGCATAGCTGAGAGAAGGGGTTTCAATAACAATGTTGCAAAGATCAACACAAGAATTTCTCATTTTGGTGCAACAACCTCTTTGGTTTCTCTTTCTCCTGCAGCTCAATCAGCACGTCTCACAATACCACCTGGAATTAGTCCAACTGCTTTGCTTGAATCACCAATCATGCTTCCTAATTCTATGGCCATGCCGTCTCCCACGACCGGGAGTTTTGCCATGCTTCAACCTCTAACTGATGAAAGATCAATGCTCACTTCTGTCACACATGAACAAAGGAAATTGGATGTGCCTACTGCCTCTAACATTGCTGCCTCTTTCAAATTTAAGCCTCAAGCTAATTTGAATCCTAATTCTTTGTCTCCGTGTTATGATTCTCTTAATCagGTTTCTAGTAATTGCCAAATGATGACTCAAGGACATAGAGACAACCAAATGCTTTTTCAAGATCAACAATTGTTAGATTTTTCATTCTCAGAAGATTTTTCAAATGACAATTCAGCTAGAAATAATGGACTTCATTTCTACAATGATGTCAAAATGATAGATGATGTGATCATTGATGGTAATAATGTTGACATGCCAATTATCTCTTGTTCTGAAGAAACTAGCGATGAAAGCACATTGCCGGAAAATTCTATCAATGACGATGATATTGCTGGACAACAACTTGATTTCGAGGATGAGCTTAAAGAGATGACTCATGCAACCGGAGCAAAAACCTCGGAGGATGGTTATAATTGGAGAAAGTATGGACAAAAACAGGTCAAAGGTAGTGAATATCCAAGAAGTTACTATAAATGTACTCAGACTAATTGTCAGGTCAAGAAAAAGGTGGAAAGATCGCACGACGGGCATATAACTGAAATTATTTACAGGGGTAATCATAACCATGCAAAACCACATTCTAATCGGCGAGGATCAACACCTTCAAATGATGAGATATCAGATATTGCTGAAATCAATGAAACATCTGATAGAGCTGATGCTGATTCAATATCGGGAAATATTCAGTTGCCAGGTAAAGATGGAAATCACATTATCGAGTGGAAACCCGATGGTCAAGAAAGGACGCGTCTGCCTTCTACTATGACCGAGCATTTGGATTCTACAAAGAGATTTAGATCTCTTGGTATGTTGGAATCGAACAACGCTCTAGAGCATTCTTCGGCACATGCTAATCATGATGGTGATAGAGATGGAGCTACTCAAGAAGTTTTACCACTTCGAGCTGGTGGTGCTGAAGAAGCTGAATCAGAATCGAAAAGAAGGAAGAACGAGAGCTATCCGGTTGAAACAATGGTACCATCGAGGGCTATTCGTGAGCCACGAGTGGTAGTGCAAGTTGAAAGTGAAGTGGACATACTGGACGATGGTTACCGCTGGCGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAACCCCAGGAGTTACTACAAATGCACAACTACTGGATGTAATGTAAGGAAACATGTGGAAAGAGCTTCACACAATCTAAAATACATCCTTACTACTTATGAGGGAAAACATAATCACGATGTTCCCACCGCAAGAAACAACAATCATATAAGCGCAAACGATGTTGCTTTGGCTTCCAGTCGTGCTAATGTGCATGCCTCCGGTATCCCAAAGTCGGAAACTCATCAAACTCTTGCACCTCATTTTGATAGAAAACCAGATTTTGCCAATGAGTTTCTGAGATCAAGTTTAATGGGAAGTTTTAGTAATGATATGAATTTTGGACCTTCTTCCATATCTCAAATGAATTATTCTTCCTTGAATAGTGTCATACCTTTTGGAGCCTATGGAACAAATCATGATCATGGTGTTGCGCCTCAAGCCGGACCTATTGCCTCAATTTTCCCCGAGTTTCCAATGCCGTTACCAATGAATCTTCCCTCATCTGGAAATTTTTCGCTACCTGGAATTAATTTCAACTATGCACAACCAATGAATTCTATTCAGTCTTACCTTTCAGGTCAACTTGTGATGGACATTGATGCAGGGTTCTTAAGGCCGAAACAGGAGCCAAAGGATGAATCTTTATATCTTACATGTACACCGTCTCTTGATCATGCAAGTTCCTCGCTCGCTCCACCATCGACATCATCATCACAATCCATTTATCAAAGTGCCATGCAAAATTTCCCTTAA 2277 0.3917 MEQDDDKNNSNENNKNKIGDGEIFGANSKGESFFDFSLKKSIAERRGFNNNVAKINTRISHFGATTSLVSLSPAAQSARLTIPPGISPTALLESPIMLPNSMAMPSPTTGSFAMLQPLTDERSMLTSVTHEQRKLDVPTASNIAASFKFKPQANLNPNSLSPCYDSLNQVSSNCQMMTQGHRDNQMLFQDQQLLDFSFSEDFSNDNSARNNGLHFYNDVKMIDDVIIDGNNVDMPIISCSEETSDESTLPENSINDDDIAGQQLDFEDELKEMTHATGAKTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQTNCQVKKKVERSHDGHITEIIYRGNHNHAKPHSNRRGSTPSNDEISDIAEINETSDRADADSISGNIQLPGKDGNHIIEWKPDGQERTRLPSTMTEHLDSTKRFRSLGMLESNNALEHSSAHANHDGDRDGATQEVLPLRAGGAEEAESESKRRKNESYPVETMVPSRAIREPRVVVQVESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCNVRKHVERASHNLKYILTTYEGKHNHDVPTARNNNHISANDVALASSRANVHASGIPKSETHQTLAPHFDRKPDFANEFLRSSLMGSFSNDMNFGPSSISQMNYSSLNSVIPFGAYGTNHDHGVAPQAGPIASIFPEFPMPLPMNLPSSGNFSLPGINFNYAQPMNSIQSYLSGQLVMDIDAGFLRPKQEPKDESLYLTCTPSLDHASSSLAPPSTSSSQSIYQSAMQNFP 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01227 758 MobiDBLite consensus disorder prediction 363 407 - -
Tsu01g01227 758 MobiDBLite consensus disorder prediction 735 758 - -
Tsu01g01227 758 MobiDBLite consensus disorder prediction 386 407 - -
Tsu01g01227 758 Gene3D WRKY domain 269 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 MobiDBLite consensus disorder prediction 455 469 - -
Tsu01g01227 758 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 27 709 - -
Tsu01g01227 758 ProSiteProfiles WRKY domain profile. 491 556 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 709 IPR044810 GO:0003700
Tsu01g01227 758 Pfam WRKY DNA -binding domain 497 553 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 Pfam WRKY DNA -binding domain 283 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 MobiDBLite consensus disorder prediction 335 354 - -
Tsu01g01227 758 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g01227 758 ProSiteProfiles WRKY domain profile. 277 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 MobiDBLite consensus disorder prediction 451 471 - -
Tsu01g01227 758 SUPERFAMILY WRKY DNA-binding domain 489 556 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 Gene3D WRKY domain 483 549 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 SUPERFAMILY WRKY DNA-binding domain 278 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 SMART WRKY_cls 282 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g01227 758 SMART WRKY_cls 496 555 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01227 Tsu-Chr1 11342694 11348481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01227 34 559 WRKY Transcription Factor Family AT5G56270 39.963 3.99e-97 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu01g01227 WRKY 9.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01227 K18835 - gmx:100813723 813.527