Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01222 ATGTCTCCTCGTCCTTCTTTTCACAAGATTATTCTTCCAACAACTCTTCAATCTAGACAATTGAGGATTCCGGATAACTTTCTTAAGAAACATGGGTCCCAGCTTTCGACTGCTGTAACACTTACTGTTCCTGATGGCACCGTCTGGAGTATAATATTGAAAAAGGTTGACAACAGAATTTGGTTTGCTGAGGGTTGGCAGGAGTTTGTTCAACGCTACTCCATTGGCATCGGATACTTTCTAGTATTCATGTATGAAGGGAATTCAACCTTCATCGTTCATATGTTTAATATGAGTACTGCTGAGTTAAACTATCAATCAGTCATGAGAAGCCAAGGGCCTTGCTATTCAAATTATCATCCTATTTTTGAAGAAATGGAAGATATTGACTCCTTTGAATTCCTGGATTCATCGCCTTCAAACCGTACTCCTGGTGCTATGGATCAATTGACACCAGGGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGCGGGTCTAAACTCAACCGCGTTAACTGGGGAGATATAGGTGGTGCTCTGTCTTCAAAGGTAGCCATTCAGTCAACCAGAGATATAGGTGTTCAGTTCAATGCTAATGAGTTCAAAAAGTCTACTGAAGAAGTAAAATTGCGCTATACTAACGATGAGGGGGTTAATAATAGTGGTGATACTAAGAAAACTCCAAGAAGGAAGCGGAAATTAGATCCAAGTGCACAGGATGCCTCTGCTGAAAATGATGAGGATGGAGATATACGCTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAATCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGAGGCAAAAACATTTGAACCAACTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGAATTTGAATGGTGTTTCAGGATTCATTAAGCTTCAGACCTCTGATGCGAGACAGTGGCCTGTTCGATGCCTTTATAGAGGTGGCCGAGCAAAGTTAAGTCAAGGATGGTATGAATTTACAGTAGAGAACAATTTAGGGGAAGGTGATGTCTGCGTTTTTGAGCTGCTTAGAACCAGAGATGTAGTGCTGCAAGTTACTTTGTTTCGCGTAAAAGAGGATGAATCAGGGTTATTCAACCCTTCTATGCAGCCAACCCAAAATGTGAGCCATGCGAAACTGTTGAACCCTCACTTACAGCACCGTGTTAGCTCAACTAAATCGGCTAAAGTTTAG 1275 0.411 MSPRPSFHKIILPTTLQSRQLRIPDNFLKKHGSQLSTAVTLTVPDGTVWSIILKKVDNRIWFAEGWQEFVQRYSIGIGYFLVFMYEGNSTFIVHMFNMSTAELNYQSVMRSQGPCYSNYHPIFEEMEDIDSFEFLDSSPSNRTPGAMDQLTPGKNHTPSLQNLFNGGSKLNRVNWGDIGGALSSKVAIQSTRDIGVQFNANEFKKSTEEVKLRYTNDEGVNNSGDTKKTPRRKRKLDPSAQDASAENDEDGDIRYRFYESASARKRIVTAEERERAINEAKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQTSDARQWPVRCLYRGGRAKLSQGWYEFTVENNLGEGDVCVFELLRTRDVVLQVTLFRVKEDESGLFNPSMQPTQNVSHAKLLNPHLQHRVSSTKSAKV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01222 424 MobiDBLite consensus disorder prediction 214 248 - -
Tsu01g01222 424 CDD B3_DNA 288 383 IPR003340 GO:0003677
Tsu01g01222 424 Gene3D - 2 100 IPR015300 -
Tsu01g01222 424 CDD B3_DNA 5 97 IPR003340 GO:0003677
Tsu01g01222 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Tsu01g01222 424 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Tsu01g01222 424 PANTHER B3 DOMAIN-CONTAINING 4 414 - -
Tsu01g01222 424 MobiDBLite consensus disorder prediction 224 248 - -
Tsu01g01222 424 ProSiteProfiles B3 DNA-binding domain profile. 290 385 IPR003340 GO:0003677
Tsu01g01222 424 Gene3D - 267 387 IPR015300 -
Tsu01g01222 424 SMART B3_2 7 99 IPR003340 GO:0003677
Tsu01g01222 424 SMART B3_2 290 385 IPR003340 GO:0003677
Tsu01g01222 424 SUPERFAMILY DNA-binding pseudobarrel domain 283 384 IPR015300 -
Tsu01g01222 424 Pfam B3 DNA binding domain 13 97 IPR003340 GO:0003677
Tsu01g01222 424 Pfam B3 DNA binding domain 293 383 IPR003340 GO:0003677
Tsu01g01222 424 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 4 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01222 Tsu-Chr1 11294236 11298102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01222 3 386 B3 DNA Binding Superfamily AT3G18990 51.031 4.36e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01222 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01222 - - gmx:100789352 637.106