Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01220 ATGGCTCACCATTTTTCTAATAAGGCCTTAggttgttttcttttgttttcttttcttctttcttctttttcaaccTATGGCCAAACTCATTTTGTCATTGGTCCAATAGTTGATGTTGGTGTTGACGGTGATATTACAATAGGATTTGGAAATGGTGTTGCTCCGGTTCAATCGCCATCGCCATCAATAATCACAGATTCTCCAGCTCCTGTTCCGGCTCCTGTTCCGGCAcctaaaattgaaattgtaaaaagcAATGGTAAAAATAGTAATGCTTCCCGCACAAGTTTTCCTAATGAGAGGCTAAGAAGTGCTTATATTGCATTACAAGCATGGAAAGAGGCAATTTATTCAGATCCTTTTAATACAACTAGTAATTGGGTTGGTAATGATGTGTGTTCTTATACTGGTGTGTTTTGTGCATCTGCTCTTGATGATCCAACATTGAATGTTGTTGCTGGTGTTGATCTTAACCATGCCGACATTGCCGGTCATCTTCCAGAAGAGTTAGGATTATTGAATGATACTGCTCTTTTCCACATCAATTCAAATAGGTTTTGTGGTATTGTTCCTGAGAGCTTTAAAAATCTCACTATTATGTTTGAGTTTGATATTAGTAACAATCATTTCGTCGGTGGTTTTCCTTCTGTGGTACTCGAATGGCCAAATTTGAAGTTCTTGGATATTAGATTCAATGACTTTGATGGATGTTTACCTCCTAAGCTCTTTGAGAAAGAACTCGATGCGATATTTTTGAACAATAACCGTTTCACATGTGGTATACCAGAAACACTTGGAAAATCAACAGCTTCTGTTGTGACTTTTGCTAATAATCATTTCACAGGTTGTATTCCAAAATCAATTGGAAACATGGTGAATTTGAATGAGATTGTGTTATTGGAAAATGGACTAGATGGTTGTTTTCCACAAGAGATTGGTTTGTTAGAAAATGTAACTGTTTTGGATGCAAGCAATAATGGATTTGTTGGGACTCTACCAAATTTATCAGGATTGAAGAATGTTGAGATTATTGACATAGCACATAACAAGCTTAGTGGATATGTTTCCAACACTATTTGTCAACTACCTTTGTTGAAGAATTTCACATTCTCTCACAATTACTTTAATGGAGAAGCTCAAACTTGTATTCCTTCAAATAATTCTCAAGTTGTATTTGATGATGCTGATAATTGTTTATCTGGAAGGAAGAATCAAAAGACGTCCAAACAATGTTTACCTGTTTTGACTAAACATGTGGATTGTAGCAAGCATTGTGGTGGCGGAGGAAATAGTCATACTccatcaaaaccaaaaccaactCCATCAAATCCACCAAAGTCCCATCCTCCTAAGAAAGAGACACCAAAGACTCAACCACCACCAATTTTGCCACCCGTTGAAGATATTCCACCAACTCTACCACCGGTTGAGGACATTCCACCAACAAGAGCACCAGTTGAAGATATTCCACCAACGAGAGCACCGGTTGAGGACATTCCTCCAAAGGCTCAACCACCACCAATTTTGCCACCCGTTGAAGATATTCCACCAACTCTACCACCGGTTGAGGACATTCCACCAACAAGAGCACCTGTTGAGGACATTCCCCCAACACTACCACCGGTTGAAGATATTCCACCAACAAGAGCACCGGTCGAGGACATTCCACCAATGAGAGCACCAGtgtcatcaccaccaccacctgtGATTTATGTATCACCCCCTATACTTGTCaattcaccaccaccaccggTGCAATCTCCTCCACCACCTGTCCACTCACCTCCTCCACCAGTTCAATCTCCTCCACCACCCGTCCACTCACCTCCTCCACCAGTTCAATCTCCTCCACCACCCtctccaccaccaccaccacccgTCTATTCACCTCCTCCACCAGTCCACTCTCCACCACCACCAGTCTACTCACCTCCACCACCACCCGTCCACTCACCTCCTCCACCAGTCCACTCCCCACCACCACCGGTGTACTCCCCACCACCACCTCCAGTAGTCCAATCTCCTCCACCACCAGTTTACTCCCCACCACCACCAGTACAATCTCCACCACCTCCGGTCAACTCTCCACCGCCACCTGTCtactcaccaccaccaccagtacactctcctcctcctccaccaGTCAACtttccaccaccaccaacatGGGAAGACATTATCTTGCCACCAATCTTTGGATCTGAATATAGGTCGCCTCCTCCCCCAACAATTGCTGGATACTAA 2244 0.3895 MAHHFSNKALGCFLLFSFLLSSFSTYGQTHFVIGPIVDVGVDGDITIGFGNGVAPVQSPSPSIITDSPAPVPAPVPAPKIEIVKSNGKNSNASRTSFPNERLRSAYIALQAWKEAIYSDPFNTTSNWVGNDVCSYTGVFCASALDDPTLNVVAGVDLNHADIAGHLPEELGLLNDTALFHINSNRFCGIVPESFKNLTIMFEFDISNNHFVGGFPSVVLEWPNLKFLDIRFNDFDGCLPPKLFEKELDAIFLNNNRFTCGIPETLGKSTASVVTFANNHFTGCIPKSIGNMVNLNEIVLLENGLDGCFPQEIGLLENVTVLDASNNGFVGTLPNLSGLKNVEIIDIAHNKLSGYVSNTICQLPLLKNFTFSHNYFNGEAQTCIPSNNSQVVFDDADNCLSGRKNQKTSKQCLPVLTKHVDCSKHCGGGGNSHTPSKPKPTPSNPPKSHPPKKETPKTQPPPILPPVEDIPPTLPPVEDIPPTRAPVEDIPPTRAPVEDIPPKAQPPPILPPVEDIPPTLPPVEDIPPTRAPVEDIPPTLPPVEDIPPTRAPVEDIPPMRAPVSSPPPPVIYVSPPILVNSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPSPPPPPPVYSPPPPVHSPPPPVYSPPPPPVHSPPPPVHSPPPPVYSPPPPPVVQSPPPPVYSPPPPVQSPPPPVNSPPPPVYSPPPPVHSPPPPPVNFPPPPTWEDIILPPIFGSEYRSPPPPTIAGY 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01220 747 MobiDBLite consensus disorder prediction 425 726 - -
Tsu01g01220 747 Pfam Leucine rich repeat N-terminal domain 108 140 IPR013210 -
Tsu01g01220 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 645 - -
Tsu01g01220 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 621 742 - -
Tsu01g01220 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 9 645 - -
Tsu01g01220 747 MobiDBLite consensus disorder prediction 437 726 - -
Tsu01g01220 747 SUPERFAMILY L domain-like 105 400 - -
Tsu01g01220 747 Gene3D Ribonuclease Inhibitor 105 404 IPR032675 -
Tsu01g01220 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 621 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01220 Tsu-Chr1 11268030 11270848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01220 97 460 Trihelix Transcription Factor Family AT3G19020 60.194 3.53e-167 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01220 - - lang:109330687 621.313