Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01197 ATGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGGGAGCAAGACATATCATTTGAAAATGCGTTGGCGACTTATCCTGAGGATGATTCGGATCGATGGGAGAAGATTGCAGCTGATGTACCGGGGAAGACTGTGGAAGAAATTAAAGAGCATTATGAGCTCTTGGTTGATGATGTTAGCCAGATTGAAGCTGGTTGTGTGCCTCTACCTTCGTATAATTCTTCTTCGGAGGGATCAACCGGTCAAGCTAGTGATGAAGGAGTTGGGGGGAAAAAGAATGGGCACAATAACGAGTCTAACCATGGAACTAAGGCTTCAAGATCGGATCAAGAACGACGGAAGGGTATTGCTTGGACTGAAGAAGAGCACAGGTTATTTCTTCTGGGCCTGGACAAGTACGGAAAAGGCGACTGGCGAAGTATATCACGGAACTTTGTGGTGACCCGAACACCGACACAAGTAGCAAGCCACGCCCAAAAATACTTCATTCGATTGAACTCAATGAACAAAGACCGAAGGCGATCAAGCATACATGATATTACAAGTGTTAACAACGGAGATGTTTCAACACCTCAAGGACCGATCACTGGCCAAACGAATGGTTCCGCTGGAAATTCTGCAAGTAAATCAGTCAAACAAGTTTCTCCGTCCACAACCGGGATACCAGGTGCAGGAATATATGCCGCCCCAACCATCGGACAACCTGTCGGAGGACCTTTAGTATCTGCTGTTGGCACCCCCGTGAATCTTTCTGCACCTCCACACATGGCGTATGGTATTCGAGCACCGGTTCCTGGCACCGTTGTACCTGGAGCACCGATGAACATGGTCCCTATGACATACCCTATGCCTCATCACACTTCTGCTCCTCACAGGTGA 879 0.4801 MDEVDSSSEWSREQDISFENALATYPEDDSDRWEKIAADVPGKTVEEIKEHYELLVDDVSQIEAGCVPLPSYNSSSEGSTGQASDEGVGGKKNGHNNESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSTPQGPITGQTNGSAGNSASKSVKQVSPSTTGIPGAGIYAAPTIGQPVGGPLVSAVGTPVNLSAPPHMAYGIRAPVPGTVVPGAPMNMVPMTYPMPHHTSAPHR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01197 292 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Tsu01g01197 292 SMART sant 6 58 IPR001005 -
Tsu01g01197 292 SMART sant 114 164 IPR001005 -
Tsu01g01197 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 166 IPR017930 -
Tsu01g01197 292 MobiDBLite consensus disorder prediction 67 83 - -
Tsu01g01197 292 ProSiteProfiles SANT domain profile. 118 166 IPR017884 -
Tsu01g01197 292 MobiDBLite consensus disorder prediction 179 217 - -
Tsu01g01197 292 Gene3D - 116 168 - -
Tsu01g01197 292 ProSiteProfiles Myb-like domain profile. 110 162 IPR001005 -
Tsu01g01197 292 MobiDBLite consensus disorder prediction 66 114 - -
Tsu01g01197 292 CDD SANT 9 56 IPR001005 -
Tsu01g01197 292 ProSiteProfiles SANT domain profile. 5 55 IPR017884 -
Tsu01g01197 292 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
Tsu01g01197 292 Pfam Myb-like DNA-binding domain 117 162 IPR001005 -
Tsu01g01197 292 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 5 279 - -
Tsu01g01197 292 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 114 164 IPR006447 GO:0003677
Tsu01g01197 292 PANTHER TRANSCRIPTION FACTOR KUA1 5 279 - -
Tsu01g01197 292 SUPERFAMILY Homeodomain-like 8 63 IPR009057 -
Tsu01g01197 292 CDD SANT 117 162 IPR001005 -
Tsu01g01197 292 MobiDBLite consensus disorder prediction 172 217 - -
Tsu01g01197 292 Gene3D - 8 55 - -
Tsu01g01197 292 SUPERFAMILY Homeodomain-like 112 167 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01197 Tsu-Chr1 11103609 11108612 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g01197 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01197 - - ccaj:109792793 504.597