Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01163 ATGTCTTCTCATTTGTTGTATTTTATATGTCTATATCTCATTTTTGGTTTGGGAGTAAAGCTATCAAATGCTCAAATTCATAAAACATATGGACATATTTTACTCCCTTCCAAGACAATAACTGTTGACTCAAAGGGGAATGGAAATTTTTCTAAGATACAATCTGCTATTGATTCTATCCCTTCAAACAATAAGGATTGGACTCTCATCAATATAAAAGCAGGACTCTACAGGGAGAAGGTGGCGATTCAACATGATAAGCCATACATAATTTTACAAGGAGAAGGAATGAAGAAGACTATAGTTGATTGGGATGACCATGCATCTACTTTACAAAGCTTTACATTCAATAGCGCGGCTGACCATATTGTGGTCAAGTTTATCACCTTTAAGAATTCATACAATGATCCAGGAAAAAACAACCAAATTTTACCAGCTGTAGCTGGAATGATAAGTGGTGACAAGTCATACTTCCATAGTGTTGCCTTCTTAGGTTTACAAGACACTTTATGGGATGATGAAGGAAGACATTACTTTAAGAAATGTTTCATACAAGGTGGTACTGATTTCATATTTGGTGCTGGCCAGTCTTTATATGAGGATTGTTTAATATCTGTAAGATCTCCAGGTTTTATAACAGCACAAGCGAGATCAAATGCAAATGATGCAAATGGATTTGTTTTTAAGAATTGTAATGTGTTTGGACAAGGTCCAACATATTTAGGAAGACCATGGAGAGCATATGCTAGAGTTCTTTTCTACAATACAAATATGTCTAACATTGTTCAACCTCTTGGTTGGAATCCATGGAATTTCGTTGGTCATGAGTTACTCCCTTACAAGACAATAGTTGTTGACTCAAAGGGGCATGGAAGTTTTTCTAAGATACAATCTGCTATTGATTCTATCCCTTCAAACAATAGGTATTGGACTGCCATTAATATTAAAGCAGGACTCTACAGAGAGAAGTTGAAGATTCCACATGATAAGCCTTACATCATTATACAAGGAGAGGGAATGAAGAAGACTATAGTTGAATGGAATGACCATGCATATACTTTACAAAGCCCTACGTTCTTCACCATGGCTGACCATATTGTGGTCAAGTTTATTACCTTTAAGAATTCATACAATGGGAAGCCAGTGGTACCTGCCGTAGCTGCAATGGTAAGTGGTGACAAGTCATACTTTCACAGTGTTGGCTTCTTAGGTTTTCAAGACACTTTGTGGGATGATAAAGGAAGACATTACTACAAGAGTTGTTTAATTCAAGGTGCTACTGATTTCATATTTGGTGCTGGCCAGTCTTTATATGAGGACTATTCCATATCTGTAAAAGCTGCAGCTCTAGGACGAGGGGTTTCTGGTTTTATAACAGCACAAGGGAGAACAAATCCAAATGATGCAAATGGATTTGTTTTTAAGCATTGTAATGTGTATGGAGATGGTACAACATACTTGGGAAGACCATGGAGAGCATATGCTAGAGTTCTTTTCTACAATACAAATATGTCCAACATTGTACTACCTCTTGGTTGGAACCCATGGAATTTTGCTGCTCATCAGTAA 1569 0.3684 MSSHLLYFICLYLIFGLGVKLSNAQIHKTYGHILLPSKTITVDSKGNGNFSKIQSAIDSIPSNNKDWTLINIKAGLYREKVAIQHDKPYIILQGEGMKKTIVDWDDHASTLQSFTFNSAADHIVVKFITFKNSYNDPGKNNQILPAVAGMISGDKSYFHSVAFLGLQDTLWDDEGRHYFKKCFIQGGTDFIFGAGQSLYEDCLISVRSPGFITAQARSNANDANGFVFKNCNVFGQGPTYLGRPWRAYARVLFYNTNMSNIVQPLGWNPWNFVGHELLPYKTIVVDSKGHGSFSKIQSAIDSIPSNNRYWTAINIKAGLYREKLKIPHDKPYIIIQGEGMKKTIVEWNDHAYTLQSPTFFTMADHIVVKFITFKNSYNGKPVVPAVAAMVSGDKSYFHSVGFLGFQDTLWDDKGRHYYKSCLIQGATDFIFGAGQSLYEDYSISVKAAALGRGVSGFITAQGRTNPNDANGFVFKHCNVYGDGTTYLGRPWRAYARVLFYNTNMSNIVLPLGWNPWNFAAHQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01163 522 PANTHER PECTINESTERASE 10-RELATED 9 276 - -
Tsu01g01163 522 SUPERFAMILY Pectin lyase-like 34 271 IPR011050 -
Tsu01g01163 522 Gene3D - 279 522 IPR012334 -
Tsu01g01163 522 Gene3D - 35 277 IPR012334 -
Tsu01g01163 522 Pfam Pectinesterase 40 271 IPR000070 GO:0030599|GO:0042545
Tsu01g01163 522 Pfam Pectinesterase 283 517 IPR000070 GO:0030599|GO:0042545
Tsu01g01163 522 PANTHER PECTINESTERASE 10-RELATED 281 520 - -
Tsu01g01163 522 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 281 520 - -
Tsu01g01163 522 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Tsu01g01163 522 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 276 - -
Tsu01g01163 522 SUPERFAMILY Pectin lyase-like 279 517 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01163 Tsu-Chr1 10777421 10788315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01163 261 522 Carbohydrate Esterase AT2G19150 44.569 4.35e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01163 - - minc:123216415 422.165