Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01161 ATGGGTTTTGGAGTTTCCTACGTTGTGTTGTTTTCTGTTATGTTTGTTTGTGCATGGTCTCAAGATGATGATGCTGCTGTGATGCAAAAGCTGAAAACTTTAAtatcaaaaaataatcataatctTGATTGGTCAAACAATGATTTTTGTCTCTGGGAGGGAATTCGTTGTAATGGAAAGAGGGTTACTTCAATTTCATTTAACAGTTCTACTGTTCAAGGTGATTTACCAGATGAAGAATGGGTGCAACTCACTGAGTTAACTGATTTTCATTGCAGTGTAAATAATTTATCTGGAGCTTTCCCTCACATGCCAAATTCACTTCAGAGATTGTATATTAACAATAACTCTTTCACTTCCATGCCAGATGATTTCTTCAATAACCTGACTAATTTGATAGAGGTGACAAttgattttaatcttttttctaAATGGCAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCCTTAAGAAGTTTTCTGCTATGAATGCTAATTTGGTTGGTGAAATCCCTGAATTATTATTTGGAACAGAAACTTTATCAAGTTTGACTGATTTGATGCTATCTTACAATTTTCTTGAAGGTAATTTGCCTAATAGTTTATCTGGCAGTACTATTGAGACACTTTGGCTGAATAATCAAAATGGTAATAAACTCAATGGTACActttttgttttacaaaataTGACATCATTGAAAGAAATTTGGGTTCAAAGTAATGCTTTTACTGGTCCTATACCTGATTTATCAAATCTTGATCAATTAGTTACTGTTAGTTTTAGGGATAATGAGTTAACTGGTGTTGTTCCATCCTCTTTAACTTCCCTTCAGAGTTTGAAAAGTGTTATACTGGCAAACAATAATCTTCAAGGGTCATATCCTAAGTTTGGAAAAGGTGTTACTGTTGAGATGAATGGGAATAACTTTTGCACTATGGATGTTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTGAACCTTTTGGTTATCCTCTCAATCTTGTTCAAAGTTGGAAAGGTAATGACCCTTGTAATGGTTCTTGGTCAGGGATTGGTTGTTCTAACGGTAACATTACCTCTATCGACTTTCGAAACAAGGGTATTTCTGGCAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTCTGACAACGTTGCTTCTTGCTAATAATAATCTCACCGGAACTATACCTAAGGAACTTGCTAGTATGCCGGCTTTGAAATTGCTAGATGTTTCCAATAATTCGTTATATGGTCAGATACCATTGTTTCGTGCAGGTGTGGTTGTTAAAACCAGTGGGAATCCTGATATCGGAAAGGATAAACCTCACGGTGGATTTAGTCCATCGAGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCGATTCAAGTTTTGAGAGAAGTTACAGATAATTTTAGCGAAAAGAACATATTGGGGAAGGGAGGTTTCGGCACTGTATACAAAGGAGAATTGGCCGATGGAACGAAGATCGCAGTTAAAAGGATGCAATCTGAAATGGGTGGTGACAAAGGGCTGAATGAGTTCAAATCTGAAATTGCGGTTCTTACTAAGGTTCGACACAGGCATTTGGTTGGACTTCTCGGCTATTGCTTGGAAGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAAGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGAGGGGTCAAAACCACTTGACTGGAAGACAAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCTCAGCATATTTTTATCCACAGGGATCTGAAACCATCAAACATCTTGCTCGGGGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCTGAAGGACAAGCCTCATTCGAGACTAGACTGGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTCACTGGACGAGTCACCACAAAGGTTGACGTATACAGCTATGGTGTGATTCTTATGGAGATTATAACCGGAAGGAGAGCACTTGACAACAGCGAACCAGAGGAAAATATGCACCTTGTTACATGGTTCCGCAGGATTCTACTGAACAAAGGCTCGTTCGAAAAGGTCATTGATCCAGCAATGGACATCAACGAGGAAGGCTTGGAGAGTTTCAAGGATATTGCAGGGTTAGCGAGCCACTGTTGTGCAAGAGAGCCTCATCAGCGTCCTGAAATGGGACAGATAGTTAATGTGCTAGCACCTCTTGTCGAGATTTGGAAGCCGGCTGAACCTGATGACGATGACATGTATGGGATTGACTTCGATATGAGTTTGCCTCAAGTACTAAGTAAGTGGCAGAACCTTGAAGGAACGAGCAACGCACTCGATGTTTCTTCATCGGTGAGTGCTAGTTATGAAAATACACAATCAAGTATACCACCTCGGTCTCCTCGATTTGCTAATCCCTATACATCTGCAGATGCGCGATGA 2499 0.3918 MGFGVSYVVLFSVMFVCAWSQDDDAAVMQKLKTLISKNNHNLDWSNNDFCLWEGIRCNGKRVTSISFNSSTVQGDLPDEEWVQLTELTDFHCSVNNLSGAFPHMPNSLQRLYINNNSFTSMPDDFFNNLTNLIEVTIDFNLFSKWQIPSSLKNCLALKKFSAMNANLVGEIPELLFGTETLSSLTDLMLSYNFLEGNLPNSLSGSTIETLWLNNQNGNKLNGTLFVLQNMTSLKEIWVQSNAFTGPIPDLSNLDQLVTVSFRDNELTGVVPSSLTSLQSLKSVILANNNLQGSYPKFGKGVTVEMNGNNFCTMDVGQPCSPLVNALLSVVEPFGYPLNLVQSWKGNDPCNGSWSGIGCSNGNITSIDFRNKGISGSISPSFASLSSLTTLLLANNNLTGTIPKELASMPALKLLDVSNNSLYGQIPLFRAGVVVKTSGNPDIGKDKPHGGFSPSSSVQNVEAGNMVISIQVLREVTDNFSEKNILGKGGFGTVYKGELADGTKIAVKRMQSEMGGDKGLNEFKSEIAVLTKVRHRHLVGLLGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDEGSKPLDWKTRLSIALDVARGVEYLHGLAQHIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEIITGRRALDNSEPEENMHLVTWFRRILLNKGSFEKVIDPAMDINEEGLESFKDIAGLASHCCAREPHQRPEMGQIVNVLAPLVEIWKPAEPDDDDMYGIDFDMSLPQVLSKWQNLEGTSNALDVSSSVSASYENTQSSIPPRSPRFANPYTSADAR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01161 832 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 449 832 - -
Tsu01g01161 832 SUPERFAMILY Protein kinase-like (PK-like) 467 783 IPR011009 -
Tsu01g01161 832 Gene3D Ribonuclease Inhibitor 20 317 IPR032675 -
Tsu01g01161 832 CDD STKc_IRAK 485 758 - -
Tsu01g01161 832 Gene3D Ribonuclease Inhibitor 322 446 IPR032675 -
Tsu01g01161 832 SMART LRR_typ_2 277 300 IPR003591 -
Tsu01g01161 832 SMART LRR_typ_2 104 128 IPR003591 -
Tsu01g01161 832 SMART LRR_typ_2 408 430 IPR003591 -
Tsu01g01161 832 SMART LRR_typ_2 253 276 IPR003591 -
Tsu01g01161 832 SMART LRR_typ_2 384 407 IPR003591 -
Tsu01g01161 832 SMART LRR_typ_2 181 205 IPR003591 -
Tsu01g01161 832 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Tsu01g01161 832 PANTHER OSJNBA0070M12.3 PROTEIN 449 832 - -
Tsu01g01161 832 PANTHER OSJNBA0070M12.3 PROTEIN 4 448 - -
Tsu01g01161 832 ProSiteProfiles Protein kinase domain profile. 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01161 832 MobiDBLite consensus disorder prediction 803 832 - -
Tsu01g01161 832 SMART serkin_6 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01161 832 SUPERFAMILY L domain-like 38 426 - -
Tsu01g01161 832 Pfam Leucine rich repeat N-terminal domain 22 58 IPR013210 -
Tsu01g01161 832 Pfam Leucine rich repeat N-terminal domain 324 359 IPR013210 -
Tsu01g01161 832 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 4 448 - -
Tsu01g01161 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Tsu01g01161 832 MobiDBLite consensus disorder prediction 803 821 - -
Tsu01g01161 832 Gene3D Phosphorylase Kinase; domain 1 450 556 - -
Tsu01g01161 832 Pfam Protein kinase domain 480 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01161 832 Pfam Leucine rich repeat 380 421 IPR001611 GO:0005515
Tsu01g01161 832 Gene3D Transferase(Phosphotransferase) domain 1 557 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01161 Tsu-Chr1 10758014 10761398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01161 462 755 Receptor kinase-like Gene Family AT4G02010 46.465 1.80e-78 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tsu01g01161 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01161 - K00924 gmx:100788903 856.284