Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01134 ATGGCAGAACGAGGTGGCGCAGCAGGTGAACGTGGTGGATTCGGAAGAGGTTTCGGAggaagaggaggaggaagagGTGGAGACAGAGGCCGTGGTCGTAGAAGAGCAGGTCGtcgtgaagaagaagaaaaatgggtTCCAGTAACAAAACTCGGTCGTCTCGTCAAAGAAGGTAAAATCCGTAGCCTTGAACAGATCTACCTTCATTCTCTTCCAATCAAAGAGCATCAAATCATTGATACACTGGTTGGCCCAACATTGAAAGATGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACTCGAGCTGGTCAAAGAACCCGGTTTAaagcttttgttgttgttggtgataACAATGGTCATGTTGGTTTAGGTGTTAAGTGTAGTAAAGAAGTTGCTACCGCGATTCGCGGTGCGATAATTCTTGCGAAATTGAGTGTCATTCCTGTTAGGAGAGGTTATTGGGGTAATAAGATTGGTAAACCACATACTGTTCCTTGTAAGGTTACTGGTAAATGTGGTTCTGTTACTGTTAGAATGGTTCCTGCTCCTAGAGGTAGTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTgggattgatgatgtttttacTTCTTCCAGAGGATCTACTAAGACTCTTGGAAATTTTGTTAAGGCTACATTTGATTGTCTGATGAAAACCTATGGTTTCTTGACCCCTGAATTCTGGAAGGAGACTCGCTTCAGCAGATCACCATTCCAAGAGTTCACAGATTTGTTGGTACAAAAGCCAACAACAGGAAAGGCCTCAATCTTGGAGGAGGAAAGGGTGGAAGCTTGA 834 0.3969 MAERGGAAGERGGFGRGFGGRGGGRGGDRGRGRRRAGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSRSPFQEFTDLLVQKPTTGKASILEEERVEA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01134 277 TIGRFAM uS5_euk_arch: ribosomal protein uS5 40 247 IPR005711 GO:0003735|GO:0006412|GO:0015935
Tsu01g01134 277 ProSitePatterns Ribosomal protein S5 signature. 104 136 IPR018192 -
Tsu01g01134 277 PANTHER BNAA03G19630D PROTEIN 2 269 - -
Tsu01g01134 277 Gene3D - 44 149 - -
Tsu01g01134 277 MobiDBLite consensus disorder prediction 1 42 - -
Tsu01g01134 277 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 243 IPR020568 -
Tsu01g01134 277 Pfam Ribosomal protein S5, C-terminal domain 171 243 IPR005324 GO:0003735|GO:0005840|GO:0006412
Tsu01g01134 277 Pfam Ribosomal protein S5, N-terminal domain 87 151 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu01g01134 277 ProSiteProfiles S5 double stranded RNA-binding domain profile. 87 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu01g01134 277 SUPERFAMILY dsRNA-binding domain-like 83 152 - -
Tsu01g01134 277 MobiDBLite consensus disorder prediction 26 42 - -
Tsu01g01134 277 PANTHER RIBOSOMAL S SUBUNIT 2 269 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu01g01134 277 Gene3D - 150 243 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01134 Tsu-Chr1 10460069 10461995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01134 41 276 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 86.864 2.54e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01134 K02981 - gmx:100797105 462.611