Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01133 ATGTCTTCTTCACGAACAACAACCGAAACAGAAACACAAGACTCACAAGCGCCGCTCCTCCGTCCACGTCATGACGGCGGCGGTCGAGGTACTTCCCTCGCGCTCTTACTCGGACGCGCCGCCGGAAGAAGAGGACCTTCGGTGCTTGTACGAGAGACAGCAGCGCGTGAGCTCGAAGAACGTCGTGCTGATTGGGGATACTCGAAGCCGGTTGTAGCGCTTGACATGTCATGGAATATGGCTTTCGTTGTTGTATCGGCGGTGATGCTATTTTGCACCTTTGATGAGCATCCGAATACGCCGATCCGTGTTTGGATCATCGGTTACGCGCTTCAGTGTTTCGTTCACGTTGTTCTGGTTTGGATTGAGTATCACCGTCGTAGTCGGAGGGATTCACGGCGGCGGCAGAGAGGTAGCGATCCTGAAATGAGTTCTGATGGATACGACAGTGATGACAGCGATGTGAACTCGTCTCAATCCAGATTTACCAAGCGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGCTGGGCTTTTACTGGATTGTCTCTGCAGATGATATGCTTCTGCAAGATGCTCCGCACTTGTACTGGTTGGCCGTTATCTTTCTGGCATTTGATGTGTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTACCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACagGAAGGTGCGTCAGAAGCAGATCTTAGTATACTTCCAAAATATAGATTTCGATTATTAAACAATGAGGAGAAGGATAATGGTGGAGCTGGAACAATGGTTCCCATAGAAACCACCAGTGCATACTTGGCAAATGAGCGGATGCTTTTACCGGAGGATGCAGAATGCTGTATATGCCTCTGCACATACGAGGATGGAGTGGAGCTTCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAAATGAATGCAACTTGTCCTCTCTGTAAGTACAATATTCTCAAGGGAAACGAACAGGTATGA 1056 0.4744 MSSSRTTTETETQDSQAPLLRPRHDGGGRGTSLALLLGRAAGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLFCTFDEHPNTPIRVWIIGYALQCFVHVVLVWIEYHRRSRRDSRRRQRGSDPEMSSDGYDSDDSDVNSSQSRFTKRCESINTGVSFLWWMLGFYWIVSADDMLLQDAPHLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLLNNEEKDNGGAGTMVPIETTSAYLANERMLLPEDAECCICLCTYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01133 351 PANTHER TARGET OF ERK KINASE MPK-1 12 351 - -
Tsu01g01133 351 MobiDBLite consensus disorder prediction 133 158 - -
Tsu01g01133 351 SUPERFAMILY RING/U-box 288 345 - -
Tsu01g01133 351 CDD RING-H2_PA-TM-RING 299 341 - -
Tsu01g01133 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 346 IPR013083 -
Tsu01g01133 351 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Tsu01g01133 351 SMART ring_2 300 340 IPR001841 -
Tsu01g01133 351 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 351 - -
Tsu01g01133 351 MobiDBLite consensus disorder prediction 1 17 - -
Tsu01g01133 351 MobiDBLite consensus disorder prediction 1 28 - -
Tsu01g01133 351 Pfam Ring finger domain 299 341 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01133 Tsu-Chr1 10446357 10451374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01133 14 350 C3H Transcription Factor Family AT1G68070 67.751 1.77e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01133 - - aip:107643865 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01133 01 10446357 10451374 Tsu01g01133 01 10446357 10451374 ECH