Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01129 ATGGGTTTTGGAGTTTCCTACGTTGTGTTGTTTTCTGTTATGTTTGTTTGTGCATGGTCTCAAGATGATGCTGCTGTGATGAAAAAGCTGAAAACTacactaacaaaaaataatcttGATTGGACAAACATAGATTTTTGCAAATGGGACAAAGTTACTTGTAATGGAGGGAGGGTCACtgaaattcaaattcagaaGAACGGTATTGAAGGTTCTTTACCAGAAGAATTGTCAAAACTCAGTGAGTTAATTACTTTTGATTGCagtgaaaatagtttatatggAGATTTCCCTTACATGCCAAATTCCCTTCAGAATTTGCATATTGACCATAACAAATTCACTTCCATGCCAAATGATTTCTTCACCAACATGACTAATTTGTTACAGGTAGCAATTGATTATAACCCTTTTTCTCAATGGCAAATTCCTTCTAGTCTTAAAAATTGTTTAGccctacaatttttttctgCTATCAATGTTAGTTTTGTTGGTGAAATTCCTGATATTTTTGGTGAAGAAACTTTTCCAAGCTTGACTTTTTTGGGTCTAAGTTTCAATTCTCTTGAAGGTAATTTGCCTAATAGTTTATCTGGTAGTTCGATACAGAAGCTTTGGGTGAATGGTCAAATGGGTAATAATCAACTCAATGGTACACTTTCTGTTTTACAAAATATGACTTCATTGCTACAAATTTGGGTTCATGGCAATTCTTTTACCGGTCCTATACCTGATTTTTCAAATCTCGGTCAATTGTATGATGTTAGTTTGAGGGATAATCATTTAACTGGTGTTGTTCCATCGTCTTTAACTTCCCTTCAGAGTTTGAAAGTTGTGAATTTAACAAACAATGATCTTCAAGGTTCACCTCCTAAGTTTCAAAACGGTGTTAAGGTTGATATGGATATGGATAAAGGGAGGCATAGCTTTTGCACTAAGGTTGTTGGCCAACCATGTAGTCCACTTGTTAATGTTTTACTTTCTGTTGTTGAACCTTTTGGTTATCCTCTTAAAATTGCTCAAAGTTGGAAAGATAATGACCCTTGTCATGGTCCTAAATGGTTAGGGATTGATTGTTCTCGTGGTAATATTTCTGCTGTTCAATTTCAAAACATGGGTTTTTCTGGCAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTGACGGAGTTGCTTCTTGCTAACAATAATCTCACCGGAACTATACCTAAGGAACTTGCTAGTATGCCGGCTTTGAAATTGCTAGATGTTTCCAATAATTCATTGTATGGTCAGATACCGTCGTTTCGCAGAGATGTGATTGTTAAAACCGATATGAATCCTGATATTGGAAAGGATAAACCTCACGGCTTGCCCGACTCTAGTTCTGGAGGTAAAGATAAGAAGAAACGTGGTGTTGGAGCTATTGTTGGTATTGTGATCGGGATTGTTGGCTTACTTGGTGCAGGGGTTTTGGTATTTGTTATGTACGGTAGAAGACATAATAAGCGCGATGACAATGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCATCTGGAAGTGCTGGTGCCGGCATTGTAGGAGGAACCAGTGGATTTAGTCCATCGAGTAGTGTTCGACTGGTGGTTTTAGTCCATCGAGTAGTGTTCAAAATGTGGAAGCTGGGAGGTTTCGGCACTGTATACAAAGGAGAATTGGACGATGGAACAAAGATCGCAGTTAAAAGGATGCAATCCGAAATGGTTGGCGACAAAGGGCTGGATGAGTTCAAATCTGAAATTGCAGTTCTCACTAAGGTTCGACACAGACATTTAGTTGCACTCCACGGTTATTGCTTGGAGGACAATGAGAAACTTCTTGTTTATGAATACATGCCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGTTGGGTCAAAACCACTCGAATGGAAGAGAAGGCTCTCCATTGCCTTAGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACATCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGGGATGATATGCGCGCTAAAGTATCTGACTTTGGATTGGTTCGACTTGCTCCAGAAGGACAAGCCTCATTCCAGACTAGAATTGCTGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACCGGAAGAGTCACCACAAAGGTTGACGTATACAGCTTTGGTGTGATTCTTATGGAGATGATAAccggaaggagagcaattgacAACAGCCAACCAGAGGAGAACATCCACCTTGTTACATGGTTCCGCAGGATACTATTGAGCAAAAACTCGTTCGAAAAGATCATTGATCCGACAATGGATATCGACGAGGAAGACTTGAATAGTTTCAAGACTATTGCAGGATTGGCCAACAACTGTTGTGTTAGAGAGCCTAATCAACGTCCCGACATGGGACACGTAGTGAACGTACTAGCACCTCTTGTTGAGATTTGGAAGCCAGCTGAACCTGATGCTGATGACATGTATGGGATTGACTTCGATATGAATTTGTCTCAAGCACTAAGTAAGTGGCAGAATCATGAAGGAATGAGCAACACACTCGATGTTTCGTATTCTTCGTCGATGGTTGATAGTTCTGACAATACACAGTCAAGTATACCGCCTCGAGCTCCTGGATTTGCTAATTCCTTTACATCTACTGATGCGCGATGA 2733 0.3868 MGFGVSYVVLFSVMFVCAWSQDDAAVMKKLKTTLTKNNLDWTNIDFCKWDKVTCNGGRVTEIQIQKNGIEGSLPEELSKLSELITFDCSENSLYGDFPYMPNSLQNLHIDHNKFTSMPNDFFTNMTNLLQVAIDYNPFSQWQIPSSLKNCLALQFFSAINVSFVGEIPDIFGEETFPSLTFLGLSFNSLEGNLPNSLSGSSIQKLWVNGQMGNNQLNGTLSVLQNMTSLLQIWVHGNSFTGPIPDFSNLGQLYDVSLRDNHLTGVVPSSLTSLQSLKVVNLTNNDLQGSPPKFQNGVKVDMDMDKGRHSFCTKVVGQPCSPLVNVLLSVVEPFGYPLKIAQSWKDNDPCHGPKWLGIDCSRGNISAVQFQNMGFSGSISPSFASLSSVTELLLANNNLTGTIPKELASMPALKLLDVSNNSLYGQIPSFRRDVIVKTDMNPDIGKDKPHGLPDSSSGGKDKKKRGVGAIVGIVIGIVGLLGAGVLVFVMYGRRHNKRDDNVQTPNAIVVHPRHSGDGNAVKISVAASGSAGAGIVGGTSGFSPSSSVRLVVLVHRVVFKMWKLGGFGTVYKGELDDGTKIAVKRMQSEMVGDKGLDEFKSEIAVLTKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDVGSKPLEWKRRLSIALDVARGVEYLHGLAHQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFQTRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMITGRRAIDNSQPEENIHLVTWFRRILLSKNSFEKIIDPTMDIDEEDLNSFKTIAGLANNCCVREPNQRPDMGHVVNVLAPLVEIWKPAEPDADDMYGIDFDMNLSQALSKWQNHEGMSNTLDVSYSSSMVDSSDNTQSSIPPRAPGFANSFTSTDAR 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01129 910 MobiDBLite consensus disorder prediction 439 463 - -
Tsu01g01129 910 Gene3D Ribonuclease Inhibitor 322 447 IPR032675 -
Tsu01g01129 910 Gene3D Transferase(Phosphotransferase) domain 1 634 847 - -
Tsu01g01129 910 Gene3D Phosphorylase Kinase; domain 1 563 633 - -
Tsu01g01129 910 SUPERFAMILY Protein kinase-like (PK-like) 564 865 IPR011009 -
Tsu01g01129 910 SUPERFAMILY L domain-like 34 429 - -
Tsu01g01129 910 PANTHER OSJNBA0070M12.3 PROTEIN 4 910 - -
Tsu01g01129 910 ProSiteProfiles Protein kinase domain profile. 555 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01129 910 Pfam Leucine rich repeat N-terminal domain 21 55 IPR013210 -
Tsu01g01129 910 Pfam Leucine rich repeat N-terminal domain 328 360 IPR013210 -
Tsu01g01129 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Tsu01g01129 910 SMART serkin_6 555 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01129 910 SMART LRR_typ_2 273 295 IPR003591 -
Tsu01g01129 910 SMART LRR_typ_2 176 200 IPR003591 -
Tsu01g01129 910 SMART LRR_typ_2 385 409 IPR003591 -
Tsu01g01129 910 SMART LRR_typ_2 249 272 IPR003591 -
Tsu01g01129 910 SMART LRR_typ_2 100 124 IPR003591 -
Tsu01g01129 910 Gene3D Ribonuclease Inhibitor 20 317 IPR032675 -
Tsu01g01129 910 CDD STKc_IRAK 564 834 - -
Tsu01g01129 910 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 4 910 - -
Tsu01g01129 910 Pfam Protein kinase domain 564 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01129 910 MobiDBLite consensus disorder prediction 879 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01129 Tsu-Chr1 10398500 10401982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01129 61 837 Receptor kinase-like Gene Family AT5G07280 30.686 3.49e-78 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tsu01g01129 Pkinase 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01129 - K00924 gmx:100776064 1128.24