Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01116 ATGAATCGTCCTCATGATGCAAAGATGTTTTCAGTTTCCGCGGGACATCCGTTCCTAAAGAATCATTTCGCAACTTTTGGTCAGAATATGAATGGCGCTAATGTTAAGCAACCACTACTTGGGGGATTATCTGCTGCGAAACCTCATTCAGTTCTTCCAATCGGTGGTACTGTTGCTGGTTTGACTGAACCATGTGTGAAACCATCTGCACCTACTTCTCAACTTACCATGTTCTATGCCGGTACTGTGAACATCTTCAATGATATCACTCCTGAGAAGGCACAAGCCATCATGTTATTGGCTGGAAGTGGCATATCTGCAGCTTCAAACATGGTTCAACCTGAAGTTCAGGCACCTAGTTCAAAGTTCGCATCAGGTGATGATGGTACGCCTATGAGTCCACCTGCAAATATACCACCCTCCTCCGGTATTTCTAGTCCTTTATCTGTTTCTTCACACACCGGTCCACAATCAGGGAGTGGCTCAAGTAGCAGTGATGAATTTCTAGCTGCTAAAACATCTAGAGGTCCTACTCCTACGACTTCTGCTAGCAAAGTGGAGACTCCAAAAGTAGTCAATGCAACCACCATGTTTTCGTCAGCTATACCGCAGGCCCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAGAGGGTGATGAGTGCAGCACCATATAACCTCAACAACAAGAATTCCGAGGACGCTCCAATGCCAAATTCAATGGTTGCAGCGAAGCAATGA 747 0.4578 MNRPHDAKMFSVSAGHPFLKNHFATFGQNMNGANVKQPLLGGLSAAKPHSVLPIGGTVAGLTEPCVKPSAPTSQLTMFYAGTVNIFNDITPEKAQAIMLLAGSGISAASNMVQPEVQAPSSKFASGDDGTPMSPPANIPPSSGISSPLSVSSHTGPQSGSGSSSSDEFLAAKTSRGPTPTTSASKVETPKVVNATTMFSSAIPQARKASLARFLEKRKERVMSAAPYNLNNKNSEDAPMPNSMVAAKQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01116 248 MobiDBLite consensus disorder prediction 224 248 - -
Tsu01g01116 248 PANTHER PROTEIN TIFY 7 2 236 - -
Tsu01g01116 248 Pfam Jas motif 203 227 IPR018467 -
Tsu01g01116 248 MobiDBLite consensus disorder prediction 142 189 - -
Tsu01g01116 248 MobiDBLite consensus disorder prediction 117 189 - -
Tsu01g01116 248 Pfam tify domain 70 102 IPR010399 -
Tsu01g01116 248 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 2 236 IPR040390 -
Tsu01g01116 248 SMART tify_2 68 103 IPR010399 -
Tsu01g01116 248 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01116 Tsu-Chr1 10269357 10273403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01116 18 237 Tify Gene Family AT3G17860 38.961 2.17e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu01g01116 tify 3.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01116 K13464 - gmx:100799314 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01116 01 10269357 10273403 Tsu01g01116 01 10269357 10273403 ECH