Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01107 ATGTTGGCGACCACAATCTCAATCCTAACACCTTCTTCCAACCTCAACCCTTCTCATTTCCTACCTTCAACAACCAGACTCACACTCCCACCTTCATCTTTCAAATCACACTCCAAACTCCCTCTTCTTGCCAGACTCAATCATAGTATCAATAGTAATGGTGGTGGTCCTGATCGTGCTGTTGGTCCCACCTCACCTGTGATTGATGAATTAGAAAGTGAAACATCTTCTGACTTTGGTGATAGCTATGTGGCCTTGTCTGTTCGTATGCTAGGGCTAGATCACGGTCCACCTGATAGAGAACAAGCTATAGTTACTCTTTGGCAATATTCACTTGGTGGAAAGAAGTGTATTGAcaatataatgcaatatcctGGCTGTATTAATCTTGTTGTCAACCTCCTTAGATCGGAGTCTAGTTTGTCATGCGAGGCAGCTGCAGGCCTTCTGCGTTCAGTATCTTCAATTGACATATATAGAGATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTGACACAATCTGACTTGGCTCTTGAGGTATTGGTGCAGAGTCTGAATATACTGTGGAATTTATCTTTCGATGAGAAGCTCCGTGTTAAACTTGCTAAGAGTGACATCCATTTGTTAGCTATTAAGTATCTTGATGATGAGGATAAGATAGTGAAAGAAGTTGCAGCGGGTGTTTTGGCGAATTTAGCATTGAGCCAGGTTAACCACGACATCATGGTTGAAGCAGGTGTTATTCCGAAACTGGCAAGGTTCTTAACGTCTGACTCAGCAGGATCTCAAGTCATTAGAAAGGAAGCAAGGAATGCATTGCTGGAACTTGCGAAGGACGAATATTACAGAATTCTTGTTATTGAGGAAGGTTTAGTTCTTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATACATCCCAGATAAATATGAGCCGATTGCATTTCCAGATGGTACAAAACTTGAAAAGACTTATAACAAACCTTCTAAATATGGTGCATCAGAATTACTTGTTGGATTAAATGTTGATAATAATATCAACATAGATGAAGCAAAAGCCAACGCAATTATCGGTCAGACACAACAGCAATTCCTTGTTCGTGTCGGTGCTATAGAAAGGGAGGAAAGTCAAGAAACGGTACCTCATTCTGAATGTTCAGATGATCCACAGCGTCTTACACTTTTACCTTGGATCGATGGTGTAGCTCGTTTAGTACTGATCTTAGAACTACAAGATATGTCAGCAATAATAAGAGCTGCAGAGTCAATTGCTAGTGCATGTATCAACGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAGTTAAGCATTTACTACGGCTTTTGTCTAGCGATGATAATGCAGTCCAGCTGGCAGTAACTCAAGCTTTCGAAAAGCTGGCTGTTAGCAATATTGTTTGCCATGTAATTGAAGCTCAAGGTGGTTTAGGTCCTTTAGTTAGTAATTTAAAATGCTCAGACGTATCCGGAGCTATTGTGGAAAAGTCTTTGAATGTACTTGCTCAGATATTAGACCCTAATAAAGAGATGCAGTTGAAGTTTTATGATGGACCAGTTAATGTATCTGAAAACACAAATGGTGGAGACAACAATGATAGTTCGACGGGATCAAGTAGCAGTGACCAAGCCGTATCGGAAACAAAGCCAAGGAACGATATACTGGACTCGGTTTTCACCGCACGCCTTGTTGAGCTTTTAAAGTGTTCTTCACCCAGTTTACAAGAAAAGGCTGCATCTGTTCTGGAGTTTGTGGCATTGGCGGACCCAACACTGACTCCAATTATATCCGTGGATATCGAAAATGGTCTCAATTCTGCTTTTCAgcaaaatttattgaaaatttcaGCAGACACAGAATCTGATGTGGAAGATCAGTTTTCAGCGGCATATGCTATTAAATTTGAAGAAGCTGGTCTTGCAATATCTGCCGCATCGCGGTTATTGACAAGACTACTTGACTCTAAGCAGTTTTGCGACAAATTAAATTTCTCCCGTTTCATTGACACACTCCGCAAAATCCTCAAGTCCAATATTCCCCTACACAGCAAAGATTGGGTGGCTGCTTGTCTAGTTAAACTAAGTTCTCTCTCTGGTTACGACACCAGTTCTAATCCAATCAATGTGGAAGTTACACTTTATGAGAAAATTCCAAGACTTGTAGAACAGATCAAAACTTCATTCTCCTTAGAAGCACAGGAAAATGCTGTTGTAGAACTTAATAGAATAGTATCTGAAGGGGTGGTGGATTCCACGGGAGCCATTATTTCTGAAGGGGCATTGTATCCTTTGGTGAAACTGATTGAAGAAGGTAGTGAAAGAGGTGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACAGTGAGAACCATGCAGCACTTGTAGCTGCTGGAGTAGTTCCAGCCTTAAGAAGAATTGTTCTGTCAGAAAAACCACAGTGGCAAAAGGCACTTCATTTGCTCAGGAGTTTGCAGACATGA 2520 0.406 MLATTISILTPSSNLNPSHFLPSTTRLTLPPSSFKSHSKLPLLARLNHSINSNGGGPDRAVGPTSPVIDELESETSSDFGDSYVALSVRMLGLDHGPPDREQAIVTLWQYSLGGKKCIDNIMQYPGCINLVVNLLRSESSLSCEAAAGLLRSVSSIDIYRDSVADSGAIEEINRLLTQSDLALEVLVQSLNILWNLSFDEKLRVKLAKSDIHLLAIKYLDDEDKIVKEVAAGVLANLALSQVNHDIMVEAGVIPKLARFLTSDSAGSQVIRKEARNALLELAKDEYYRILVIEEGLVLVPLIGAAAYKSYIPDKYEPIAFPDGTKLEKTYNKPSKYGASELLVGLNVDNNINIDEAKANAIIGQTQQQFLVRVGAIEREESQETVPHSECSDDPQRLTLLPWIDGVARLVLILELQDMSAIIRAAESIASACINEHMRIAFKEAGAVKHLLRLLSSDDNAVQLAVTQAFEKLAVSNIVCHVIEAQGGLGPLVSNLKCSDVSGAIVEKSLNVLAQILDPNKEMQLKFYDGPVNVSENTNGGDNNDSSTGSSSSDQAVSETKPRNDILDSVFTARLVELLKCSSPSLQEKAASVLEFVALADPTLTPIISVDIENGLNSAFQQNLLKISADTESDVEDQFSAAYAIKFEEAGLAISAASRLLTRLLDSKQFCDKLNFSRFIDTLRKILKSNIPLHSKDWVAACLVKLSSLSGYDTSSNPINVEVTLYEKIPRLVEQIKTSFSLEAQENAVVELNRIVSEGVVDSTGAIISEGALYPLVKLIEEGSERGVEASLTILYNLSMDSENHAALVAAGVVPALRRIVLSEKPQWQKALHLLRSLQT 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01107 839 Gene3D - 217 319 IPR011989 -
Tsu01g01107 839 Gene3D - 83 216 IPR011989 -
Tsu01g01107 839 Gene3D - 622 839 IPR011989 -
Tsu01g01107 839 SUPERFAMILY ARM repeat 724 829 IPR016024 -
Tsu01g01107 839 MobiDBLite consensus disorder prediction 531 560 - -
Tsu01g01107 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 770 812 IPR000225 GO:0005515
Tsu01g01107 839 SMART arm_5 240 283 IPR000225 GO:0005515
Tsu01g01107 839 SMART arm_5 155 198 IPR000225 GO:0005515
Tsu01g01107 839 SMART arm_5 199 239 IPR000225 GO:0005515
Tsu01g01107 839 SMART arm_5 557 598 IPR000225 GO:0005515
Tsu01g01107 839 SMART arm_5 759 799 IPR000225 GO:0005515
Tsu01g01107 839 SMART arm_5 800 839 IPR000225 GO:0005515
Tsu01g01107 839 SMART arm_5 434 474 IPR000225 GO:0005515
Tsu01g01107 839 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 34 839 - -
Tsu01g01107 839 SUPERFAMILY ARM repeat 91 688 IPR016024 -
Tsu01g01107 839 Gene3D - 387 615 IPR011989 -
Tsu01g01107 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 167 200 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01107 728 820 U-box Gene Family AT3G46510 38.298 2.45e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01107 - - lang:109360684 1095.49