Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01100 ATGTCATGCGAGTCACTGTCCACATATGCACAACAATCACTAATATTGCTACCTGCCATAACAAAACTGAGGATTAAAAGAGGTATTAATCTTGCAATTCGTGATGCTAAATCCAGCGATCCTTATGTTGTTGTCCACATGGCTGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAATGGAATGAAGAATTAACCCTTTCTGTAAGGGATGTTAAAATTCCTATACATTTGACAGTTTTCGACAAAGACACTTTCTCCGTAGACGACAAAATGGGTGATGCAGATATAGACTTGAAACCATATGTACAAAGTGTACAAATGAAGTTGGACAAACTTCCAAATGGTTGTGCAGTCAAGAGGGTTCAAGCAAATAGGACTAACTGTCTTGCTGAAGAGAGCAGTTGTGTTTATAGAAATGGAAAAATCATCCAAGGAATGATTCTACGGTTGAGAAATGTCGAGAGCGGGGAATTGGTTGTCGAAATCGAGTGGGTGGATGTTTCAGGTTGCAAAGGGTATATGGTTTGGAAAGATGAATTTTCTCATCTTTATAGACTATCAAATGCAAACAATGGCGGAATTTCAGAGATGGGCAGCTGGAGTAACACTCTGTGGAAATGGAATCTCTGCTGGACAAGAGATCTTACAGCAAAAGCACTAATACCTTATGTTGCAGACTTGAAGGCTGTGTTGGAAGGTGTGGCTTCTAGCGTAGAAGAAGAATACCGTCTGAATGGATTCTAG 759 0.4005 MSCESLSTYAQQSLILLPAITKLRIKRGINLAIRDAKSSDPYVVVHMAEQKLKTRVVKNNCNPEWNEELTLSVRDVKIPIHLTVFDKDTFSVDDKMGDADIDLKPYVQSVQMKLDKLPNGCAVKRVQANRTNCLAEESSCVYRNGKIIQGMILRLRNVESGELVVEIEWVDVSGCKGYMVWKDEFSHLYRLSNANNGGISEMGSWSNTLWKWNLCWTRDLTAKALIPYVADLKAVLEGVASSVEEEYRLNGF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01100 252 Pfam C2 domain 22 109 IPR000008 -
Tsu01g01100 252 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 20 177 IPR044562 -
Tsu01g01100 252 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 113 IPR035892 -
Tsu01g01100 252 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
Tsu01g01100 252 Gene3D C2 domain 20 175 IPR035892 -
Tsu01g01100 252 CDD C2_ArfGAP 22 161 - -
Tsu01g01100 252 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 20 177 - -
Tsu01g01100 252 SMART C2_3c 20 115 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01100 Tsu-Chr1 10116432 10119229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01100 51 177 C2H2 Transcription Factor Family AT1G70790 66.667 1.05e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01100 - - gmx:100788395 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01100 01 10116432 10119229 Tsu01g01100 01 10116432 10119229 ECH
Tsu01g01100 01 10116432 10119229 Tsu06g03731 06 49381196 49384227 ECH