Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01097 ATGCCTATAAGGTACTCTTACAAAGACATCAAAAAGATAACAAAACAATTCAAGACAGAACTAGGAAATGCAGGTTTTGGATCTATTTTTAAAGGACAACTACGAAGTGGTCGTCTTGTAGCAGTCAAGTTATTGGACAAAGGCAAATCCAGCGGTAAAGATTTTGTCAATGAAGTTGCTACCATCGGTAGGATTCACCATGTTAATGTGCCTCATAACATCCTTCTTGAAAAAGATGATGGAGATTTGCAAATGCCTAATAAGCCATACCTTTTTGCACAAGAACTACCAGCTAAGGATGCTAGAGTTGATAATACTGGCATTTCAAACATCAATAATTGA 342 0.3655 MPIRYSYKDIKKITKQFKTELGNAGFGSIFKGQLRSGRLVAVKLLDKGKSSGKDFVNEVATIGRIHHVNVPHNILLEKDDGDLQMPNKPYLFAQELPAKDARVDNTGISNINN 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01097 113 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Tsu01g01097 113 Pfam Protein tyrosine and serine/threonine kinase 17 72 IPR001245 GO:0004672|GO:0006468
Tsu01g01097 113 ProSiteProfiles Protein kinase domain profile. 15 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01097 113 SUPERFAMILY Protein kinase-like (PK-like) 3 74 IPR011009 -
Tsu01g01097 113 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 70 IPR045874 GO:0004672
Tsu01g01097 113 PANTHER - 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01097 Tsu-Chr1 10106370 10106927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01097 4 70 Receptor kinase-like Gene Family AT5G38260 50.746 1.48e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g01097 PK_Tyr_Ser-Thr 2e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01097 - - mtr:MTR_1g031200 127.102